RNA id: TU472587


Basic Information

Item Value
RNA id TU472587
length 1161
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G398446
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1076828 ~ 1078028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGGACTTCCTGTATTGATGAAGCATATACATATCAACAGTTTTGTAGTACAACATGTTtcatagtcatttttttccccatgatttCAATTTTtacaagaataaaaaatgagCAGGTGGAAATGAAATGTACCTTTTCATCCTTATCTCTATGGCAACAAACATTTTGTTTCTGATGGAGCAGAGTCTCAGTGtcagtctctcactctctctctcacacacacacacacacacacacacacttgcttttATTCCGAAAGTAtcatcattatatatttttttgtctgtaatgGTGCCTtaactccctattccctacaaaCACAGCAGGGAATTCTGGGTATGCCGCACTCATCCTTTGTACcctaacctactgcagtgcattgtgggatttcctGTGTGCACTCGATTTCCTCCACTTTGCATTCAGACTacaaaatggccaaaaaaaaaaaaatagtgcactacgtagggaaCAGGGTGTGATTTCAGACATAGCTGTttgttttgatgaaaatgtAACAACACAGGCACATCATAGGCTGCTTgctcagtctcacacacacacacacacacacacacaccccttcaaAGGCAATAAATGTCCGTTCTCCACGGCAACAATGTCTCCGTGGCAACAAGATTTCGTCTGTGTGAAGGAATGACGCCGTAACGGAGGCATAAATGATGAGTAAAATACTGCTTTAAAATCAAAATGGGTAAAAATAATtacttgaataataataataataataataacaataataataataataatacacgtGTCGGCTTCTTGTTCCCAAAAACACTGCTGAATAAAACAAAGTAATGAGCTTTAAACGGAATTAAAACTCAAATGATATGAAAAATGAACGTTTTTCGTCCGGCTTcgtcttctttccttccttccactgtagtgttgatttttttttttcctttcagactTTTCCCCCATGATACAGGTAGattattaacaaaaaattttttttctttgtcacgacagtttttttctttgtgttctttaaagaaagtttataattttttttttacattccgGTCAGTTGATCCATAATCAATAACGTCTGTAAAAGCGCTGGTCTCAATCCTTCTGCTCGGTCGCACTCGCCGTCTGCAGAGAGAACGCACAAACCCTCCACATCAGA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472490 lncRNA downstream 80058 949692 ~ 996770 (-) True G398364
TU472495 lncRNA downstream 126283 895071 ~ 950545 (-) True G398369
TU472548 lncRNA downstream 132342 942257 ~ 944486 (-) True G398413
TU472532 lncRNA downstream 135081 883189 ~ 941747 (-) False G398403
TU472530 lncRNA downstream 151757 883189 ~ 925071 (-) True G398403
TU472568 lncRNA upstream 4789 1082817 ~ 1083831 (-) True G398433
TU472600 lncRNA upstream 58609 1136637 ~ 1139668 (-) True G398459
XR_004577541.1 lncRNA upstream 110525 1188553 ~ 1191451 (-) False LOC117596417
XR_004577540.1 lncRNA upstream 110525 1188553 ~ 1191446 (-) False LOC117596417
XR_004577539.1 lncRNA upstream 110525 1188553 ~ 1190249 (-) True LOC117596417
XM_026910201.2 mRNA downstream 122628 951202 ~ 954200 (-) True fmc1
XM_034301676.1 mRNA downstream 170453 891920 ~ 906375 (-) True fam234b
XM_034301679.1 mRNA downstream 186526 887935 ~ 890302 (-) False LOC117596444
XM_034301594.1 mRNA downstream 237387 833892 ~ 839441 (-) True LOC113527139
XM_034301448.1 mRNA upstream 30665 1108693 ~ 1111909 (-) True LOC117596399
XM_026910221.2 mRNA upstream 37606 1115634 ~ 1124106 (-) False LOC113524091
XM_026910220.2 mRNA upstream 37606 1115634 ~ 1124105 (-) True LOC113524091
XM_034301450.1 mRNA upstream 95372 1173400 ~ 1176207 (-) True LOC117596401
XM_026910219.2 mRNA upstream 164759 1242787 ~ 1250542 (-) True LOC113524089
TU472483 other downstream 122867 951206 ~ 953961 (-) False fmc1
TU472541 other downstream 156325 919264 ~ 920503 (-) True G398408
XR_003403678.1 other downstream 162476 914198 ~ 914352 (-) True LOC113536357
XR_004577595.1 other downstream 166605 910069 ~ 910223 (-) True LOC117596482
XR_004577594.1 other downstream 169049 907625 ~ 907779 (-) True LOC117596481
TU472656 other upstream 198625 1276653 ~ 1281771 (-) False LOC117596427
TU472657 other upstream 198625 1276653 ~ 1317636 (-) False LOC117596427
XR_004577580.1 other upstream 383296 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 383326 1461354 ~ 1462070 (-) False LOC117596459
TU472900 other upstream 490975 1569003 ~ 1591729 (-) False st13

Expression Profile