RNA id: XM_034301560.1


Basic Information

Item Value
RNA id XM_034301560.1
length 893
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC117596427
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1276278 ~ 1317636 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAACGCATGATGGTAAGAAAACTGTAGAAACacagtgcagagagagagagagagagagagagagagagagagaagaccaaaaaggagaaaatggaggagaaaatgctaagaaagacagaaaatagGGAAATACAGATCAGGAGACGCAGGAGGGAgaaaatgaTGAACTCAGCGCCCCCTGCAGGAAGTGCTTTATCAGCTCCAGCGGGCGGAGTCGGCCCAACTACACCGAAAAAGGGCCCACCCAAATTCAAACAGAGACAAACACGCACATTTAAGAGCAAGGCACCTAAACCCGGCCAGAAAGGgtttggtGACGACATTCCAGGAATGGAGGGCCTCGGCACAGATTTCACGGTGGTGTGTCCCTGGGAGGCCTTCGGCGACATGGAGCTCAGCGACCTTGCCAAATACGGCATTATTTAAATCCCGCCTCTCATCTTCTCTCTGCCTTTGTCTCCACCCCTTCCTAACAGACACCACACCCCCTCTCTGATAAAAGAGACTGATATCGATGCATACATATGAATATAGTAGAATTTGtattggattattattattattaatagtagtagtagtattagaattagtagtagtattagtattattatattttatactctCGGTTATGATGTCTGTTATCCCTCCCACTCTGCCCCTCTGCCCCACCCACCACGCCCACCTGCCCTCCCAACATCACCGTAATAATGAATGTTAATAGTTAATTAGTAGCGCTCTCATCCTGCATGTGGATGCGTTACGATATAAATAACGTAGTGTAAATATTCTGTTCTCCGCTAATCTCCGCTGTTCATCTTCACTGATGCAGAATAAATGTGAACGTCTGTTTGGAATTATCTGGGGTAGAAATCAGTAAAGTttatattttc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577541.1 lncRNA downstream 84830 1188553 ~ 1191451 (-) False LOC117596417
XR_004577540.1 lncRNA downstream 84835 1188553 ~ 1191446 (-) False LOC117596417
XR_004577539.1 lncRNA downstream 86032 1188553 ~ 1190249 (-) True LOC117596417
TU472600 lncRNA downstream 136613 1136637 ~ 1139668 (-) True G398459
TU472570 lncRNA downstream 192450 1026342 ~ 1083831 (-) False G398433
TU472671 lncRNA upstream 3208 1320816 ~ 1323730 (-) True G398516
TU472714 lncRNA upstream 23585 1341193 ~ 1341827 (-) True G398542
TU472717 lncRNA upstream 29331 1346939 ~ 1363036 (-) True G398545
TU472723 lncRNA upstream 33987 1351595 ~ 1365941 (-) True G398549
TU472874 lncRNA upstream 166147 1483755 ~ 1516314 (-) False LOC113524069
XM_026910207.2 mRNA downstream 8435 1255673 ~ 1267846 (-) False zgc:65811
XM_026910205.2 mRNA downstream 8435 1255673 ~ 1267846 (-) True zgc:65811
XM_026910206.2 mRNA downstream 8457 1255673 ~ 1267824 (-) False zgc:65811
XM_026910219.2 mRNA downstream 25739 1242787 ~ 1250542 (-) True LOC113524089
XM_034301450.1 mRNA downstream 100074 1173400 ~ 1176207 (-) True LOC117596401
XM_026910196.2 mRNA upstream 66083 1383691 ~ 1387474 (-) True LOC113524073
XM_026910185.2 mRNA upstream 74820 1392428 ~ 1407764 (-) True LOC113524067
XM_034301741.1 mRNA upstream 102281 1419889 ~ 1447053 (-) False LOC117596456
XM_034301740.1 mRNA upstream 102281 1419889 ~ 1447053 (-) True LOC117596456
XM_034301742.1 mRNA upstream 109189 1426797 ~ 1447053 (-) False LOC117596456
TU472483 other downstream 322320 951206 ~ 953961 (-) False fmc1
TU472541 other downstream 355778 919264 ~ 920503 (-) True G398408
XR_003403678.1 other downstream 361929 914198 ~ 914352 (-) True LOC113536357
XR_004577595.1 other downstream 366058 910069 ~ 910223 (-) True LOC117596482
XR_004577594.1 other downstream 368502 907625 ~ 907779 (-) True LOC117596481
XR_004577580.1 other upstream 143716 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other upstream 143746 1461354 ~ 1462070 (-) False LOC117596459
TU472900 other upstream 251395 1569003 ~ 1591729 (-) False st13
TU473233 other upstream 412482 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 507733 1825341 ~ 1881058 (-) False G398890

Expression Profile