RNA id: XM_034301747.1


Basic Information

Item Value
RNA id XM_034301747.1
length 3995
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC113524069
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1462119 ~ 1516314 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGACTGCTGAGAAAAAAGCAGAAGAAATCAGACTCTTCAGGACTCTGCGCATGCTTTACTAATATTCAAGATGGAAACCTCTGATCTGGAAGCAGACAATATGGCCCCATCTTCAAAAAAAGAGTAAAATCCTGGAAAAGAggtcagactcaccagaacccagctgtgtctCCATGAAAAGTGATGCATCTATGGATTgtccacaggttttcagtgaTGGAGCCCCCATATCTGTACACAGTAAAATCCTGGAAAAGAggtcagactcaccagaacccagctgtgccTCCATGAAAAGTGATGCATCTATGGATTCTCTGTGGGTTTTCAGAGGTGGAGCCCCCTTATCTGTACACAGTAAAATCCTGGAAAAGAggtcagactcaccagaacccagctgtgccTCCATGAAAAGTGATGCATCTATGGATTCTCTGTGGGTTTTCAGAGGTGGAGCCCCCGTATCTGTACACAGTAAAATCCTGGAAAAGAggtcagactcaccagaacccagctgtgtctCCATGAAAAGTGAAGCATCTATGGATTCTCCGTGGGTTTTCAGAGGTGGAGCCCCCGTATCTGTACACAGGCAAGACACTGCATCTGCTGGAAGTGAGGTCCAGAAAACCTTCAAGTTAAATCTGTTGAAGAAGTTTGAGTGTTTGAATGGAGTGATGATAAACCAGGGGAACCCAATACtcctgaatgagatctacacagagctctacatcacagagggagacagtggagacatcaataatgaacatgaggtgagacagatggagGCAGCATCCAGGAGAAAAACAACAGAGGAAACACCAATCAAATGCAATGACATCTTTAAGCCCTTATCTGAAGAAGACAACCCCATCAGGACCGTTCTGACAAAGGGCGTCGCTGGCATCGGAAAAACaatctctgtgcagaagttcattctggactgggctgaagggaaagcaaatcaggacgtccACCTCATATTTCCACTTCCTTTCAGAGAACTGAATTTGATCAAGGACCAAAAACTGAGTCTGATGGAGCTCCTTCATGTCTATTTTAAGGagacaaaagaaatggacaTTTCCAGTTTAGAAAaggttctgtttatttttgatgGAATGGATGAGTGTCGTTTCCCTCTAGATTTCCAGAacgcagtgagagtgtgtgatgtaaatgaATCAGCATCAGTGCATGTGGTGCTGAGAAACCTGATCAaagggaatctgcttccctctgctctcatcTGGATCACTTCCCGACCAGCAGCAGCGGTTGAAATCCCCTCTGAGTGTGTCGATCGAGTCacagaggtacgagggttcACAGACCCACAGAAGGAAGAATATTTCAgcaagaggatcagtgatcagaacCTGGCCAataacatcatcacacacctgaAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttggttgaagcagagagtggagagctccccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAGAGAAAAGTACTCAAAGAAGCAGGAGAGTTATGAAGAAATGGTTCTGAAACTGGGACGACTGGCTTTTGAGCAACTGATGAAAGGCAACCTGATCTTCtgtgaggaagacctgagagagtgtggcattgatgtgaAAGAAGCAGCAGTGTACTCTGGTGTGTGTAcgcaaatcttcagagaggagtttgggcttgaCCAGAGTAAAGTGTACTGCTTTGttcatctgagtgttcaggagcaTCTCGCAGCTCTGTATGTGCATCTGACATTCATGATGGAAAAGAGAAATGTTCTAGATCAGAGTCAGTCTTCAAAACTGGAAACGAAAGAAATTACAATCTCAGGTGTCCACAAGAGTGCTGTAGATCAGGCCTTAATAAGCTGGACTGGACATCTGGATCTTTTCCTTCGCTTTCTTCTGGGTTTCTtgctggagtccaatcagaatcTCTTACATCACTTAGTAACACAGACAGGAAATAGCTGCCAGAGCAAAGAGGAAACAGTTCAGTACATTAAGAAGGAGATCAGTAGAGATCTTCCTACAGAGAagtccatcaatctgttccactgtctgaatgaactgggTGACAATTCTCTAGTGGAGGAAATCCAacactacctgaagtctggaaaacAAAGTGAACTCTCTCCTTCACAGTGGTctgctctggtgtttgtgttactgacaTCAGCGCAGGAGCTGGAAGAATTTGACCTGagtaaatatacaaatacagacaacgTATCAGATTGGATTCTTGTGAAGGTGATGCCTGTGGTTGCAGAATCCAGAAAAGCAATtaTCAGGTGCAATACAATTAAAGAGAAAAGTTGGACAGCTCTGGACTCAGTGCTCAGCTCAGAAACCTCTAATCTGAGAGAACTGCATCTGAGTGTGAATACACTGGATCTGACTGGGACTAATCTAGGAGTCTCAGGAGTGAAGCatctctctgctgtactggagaatcctctCTGTAAagtggagacactgagGTTGGAGTCTTGTCatgtctcagatgaaggctgtgctgctctggcttcagctctgagatcaaacttCTCACACCTGAGAAAACTCCATCTGTCCAAGAGTAATCTAGGAGACTCAGGActgaagtgtctctctgctggactggagaatcctcactgtaaactggagacactgagGTTGTGCTTTTGTGGTATCttagatgaaggctgtgctgctctggtttcagctctgagatcaaacccttcatacctgagagaactggatctgtatGGAAATAAACTAGGAGACTCAGGAaggaagctgctctctgctcttcaggatgATGAATGTTACAACCTAGAGGAAGTGTTGTGGTGATGAACatctgtgtgtgactgatgaaaaCTCCGGTGTTCCTGCATTTCCATGTTGGAGAATAGAGAACATGTTTACAGACACATCAGTCATTTAGTTCTAACACATTAAATAGACTTAGagaagtgagaagtgtgtgttcatCTTGCACGGTGAATCAGACTGCACACAATTCTACACTGAGACTGTACAGGATGCAGACATTAGGACTGAACTCAGAACAGCTGGAATGGAGACTCAGTGTTGATCAGaacacttcagtgtgtgtgatcctGAAGTTACTGAGTGTCACAATCAGTCCCTGGAGTCACAGAGACCCTCCTGCACATTCAACACCTCATTCACTCCGAATGTTTATCTGATAATCATCTGTCTTTTAAAGAGACTGAGGCGCAGAGAATATACAGTGTTTTCTGGATGTGAATGCTttctgaaatttatttattcctatatttgaaatgaataaacaaaaaataagagAAGTTTTTACTTACATCATTTCATAACTTGCACAGGCTCTTATAGTTTACTGTGTAATAAGTAAGCAATAATCTCTGACGGGGCGTCATACGGCCTGAAGTGAAGTGGATTTAATGTTACCAccataaagttgattattttcctataacagcacatccctttttattcttcttacacaatagcaatttgccaaagactTTGAGTAGATTTTGAGATTTGTATGTTGGAGATTACTCTTCGgcaatttagcttttttttattttattttttaattcgtTAATgcacatcactttttttttttatgttaaactGTTATTGTAAATAGTTACACTTACTGCAGTTATAACTTGCTGTGTGATTTCACAGTgtaatgtaaatacagaatTTTAATCCTTGtcatatgttattgtttctcaAACCACTGGATGAAAAGACCAAGATGTATAAACTAAAACTTTCTACAGAGTGTAAAATAGTGTCTTTTACTTGTTTGTAATGCACTAAATATATCCAATAGGAGGCAGTTTATGATTTATCCTTAATAATTTAGTGCACTGTATGCTGTTTACTGATTCATTTATATGTATACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472723 lncRNA downstream 96179 1351595 ~ 1365941 (-) True G398549
TU472717 lncRNA downstream 99084 1346939 ~ 1363036 (-) True G398545
TU472714 lncRNA downstream 120293 1341193 ~ 1341827 (-) True G398542
TU472659 lncRNA downstream 136102 1252043 ~ 1326018 (-) True G398509
TU472915 lncRNA upstream 37331 1553627 ~ 1554940 (-) True G398679
TU472901 lncRNA upstream 48163 1564459 ~ 1577378 (-) True G398667
TU472922 lncRNA upstream 50488 1566784 ~ 1578770 (-) True G398686
TU472936 lncRNA upstream 85940 1602236 ~ 1603986 (-) True G398697
TU472969 lncRNA upstream 131404 1647700 ~ 1665491 (-) True G398718
XM_034301762.1 mRNA downstream 50 1457832 ~ 1462070 (-) False LOC117596459
XM_034301739.1 mRNA upstream 6211 1522507 ~ 1538673 (-) False LOC113524072
XM_034301738.1 mRNA upstream 6211 1522507 ~ 1538673 (-) True LOC113524072
XM_034301643.1 mRNA upstream 49499 1565795 ~ 1591734 (-) True st13
XM_026910204.2 mRNA upstream 123273 1639569 ~ 1649047 (-) True cbx7a
XM_034301521.1 mRNA upstream 167302 1683598 ~ 1690681 (-) True mief1
XR_004577580.1 other downstream 50 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 50 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 144484 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 180349 1276653 ~ 1281771 (-) False LOC117596427
TU472483 other downstream 508159 951206 ~ 953961 (-) False fmc1
TU472900 other upstream 52707 1569003 ~ 1591729 (-) False st13
TU473233 other upstream 213794 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 309045 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 731864 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 856000 2372296 ~ 2426606 (-) True G399028

Expression Profile