RNA id: TU472894


Basic Information

Item Value
RNA id TU472894
length 292
lncRNA type intronic
GC content 0.46
exon number 2
gene id G398665
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1484185 ~ 1485548 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gatgaacaaatgggcagcagcgtagcattgctgcagcattgtttagacacGTGTCAAGATCATGTGagccaaatgtggtgaagactggacaaaatttggaggaggagtagcaaaaattgcagttgtaagcatttttaagcacgttattgttacttttgaccagtaggtggcactggcacgaaatttgttgcatagcctcaggtcatggttctgaagatgcctaccaagttttgtgtcagtgtgcagaGTCGCTGCTGAGATAcatcctcacttcctgtttggcggcttctCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472723 lncRNA downstream 118244 1351595 ~ 1365941 (-) True G398549
TU472717 lncRNA downstream 121149 1346939 ~ 1363036 (-) True G398545
TU472714 lncRNA downstream 142358 1341193 ~ 1341827 (-) True G398542
TU472659 lncRNA downstream 158167 1252043 ~ 1326018 (-) True G398509
TU472915 lncRNA upstream 68079 1553627 ~ 1554940 (-) True G398679
TU472901 lncRNA upstream 78911 1564459 ~ 1577378 (-) True G398667
TU472922 lncRNA upstream 81236 1566784 ~ 1578770 (-) True G398686
TU472936 lncRNA upstream 116688 1602236 ~ 1603986 (-) True G398697
TU472969 lncRNA upstream 162152 1647700 ~ 1665491 (-) True G398718
XM_034301762.1 mRNA downstream 22115 1457832 ~ 1462070 (-) False LOC117596459
XM_034301739.1 mRNA upstream 36959 1522507 ~ 1538673 (-) False LOC113524072
XM_034301738.1 mRNA upstream 36959 1522507 ~ 1538673 (-) True LOC113524072
XM_034301643.1 mRNA upstream 80247 1565795 ~ 1591734 (-) True st13
XM_026910204.2 mRNA upstream 154021 1639569 ~ 1649047 (-) True cbx7a
XM_034301521.1 mRNA upstream 198050 1683598 ~ 1690681 (-) True mief1
XR_004577580.1 other downstream 22115 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 22115 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 166549 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 202414 1276653 ~ 1281771 (-) False LOC117596427
TU472483 other downstream 530224 951206 ~ 953961 (-) False fmc1
TU472900 other upstream 83455 1569003 ~ 1591729 (-) False st13
TU473233 other upstream 244542 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 339793 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 762612 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 886748 2372296 ~ 2426606 (-) True G399028

Expression Profile