RNA id: TU472927


Basic Information

Item Value
RNA id TU472927
length 1486
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G398689
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1658750 ~ 1661237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taGGTATTACGACAGAGTACACATGTAACACATTGCGCAAATCATAACATCAGATAAATATTTATGGCAACATAatacatcattttaattatattattgttaataaatagaaaaattgcAATGATAAGttaaaatatgataataaaGTGACAAAGGCGGTTTTCGGTTTAAACCAAATCAGGCATCAGAAATTCGTGCTAATGCTTATTTTTCCTACGTTAATCTGTAATCTGTCTCTACGTGTCTTGATCCGTGCGCTTTATTTCCGTTATGATTGAGTTTACGTTGTGAaaactcaacaacaacaacaacaacaacaacaacaatctgTTGTGCGGTTTATCTCACACCTGGTCCAGATCAGGCtttgctgaaaaaataaaataaaaataatactgtaatatGGCAACCACTAACTTAAACACAAAGTGCAGTGACTAAAAACACAGGAAAGAGGTCAGGAGTtcaaataatgtgcaaataaatggacaaaaatcaAATGTTCATGAGAGAttaaacactgtataacactGAAAAGAGTTAGAAATCGCACTACAAACACTAGAGGCTTCATTTACTAAAGATTTATAGATTaacaattttaattataataaatactcGATTTAAAACCCATTTACTGACTATAGGACGGGTTCAAACTGTAGTAACGTATCTGAATAAACATAGCTGTGTTTAAAGATGTCGATGTTTCTACGCCGTTTCCACGGCGATCCAGCCGCGTTTAAAATAAGACGATGGAGTTACGTAGACGATATTTGCTTGCGAGAATTTTAACAcactctgaattttttttttttttttttaaaaggagcATGACTGAATTGTAAGTGCCACAATCAAggattcattttcacacacacacacacacacacacacacacacacacacacactgttcccatattattaaatacatgGTTCTTGCAGCTGCTCTGTTCATCTGTATAACACTCGTAactgtactacacacacacacacacacacacacacacacacacgtccacaTCAGTggcactgctgtgctgagaatgaacACCACCTGAATCATCACTGTGCTCCAATCAGAAGGCAGGAAATCAGCTGCAGAATTTGGACCCAGCGTCCCGTGCGTCCTTTACAATGTAGACAATCCCATAATTCCATTCACCAACATGGCCGGAATCATTTACAAAGGTAAACGGTTTGACTGATTCGAGTGATTCATctcataaataacaaaaaaggtGAGTGATTTGATTAATTTGTCCGACTTCAACTGATTAAACTTGTAGCTAACAAATGTAAGTGATTTGACTGATTTGAATGATTCAATTGATTCATCTCACATCTAATAAATGTAAGTGATTCAAGTGATTCAATTGATTCATCCCATAGTTAACAAATGCAAGTGATTCAACTGATTCAATTGATTCATCCCATAGTTAACAAATTTATGTTCAATTGATTCAATTTAAGTTCAATTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472936 lncRNA downstream 54764 1602236 ~ 1603986 (-) True G398697
TU472922 lncRNA downstream 79980 1566784 ~ 1578770 (-) True G398686
TU472901 lncRNA downstream 81372 1564459 ~ 1577378 (-) True G398667
TU472915 lncRNA downstream 103810 1553627 ~ 1554940 (-) True G398679
TU472894 lncRNA downstream 173202 1484185 ~ 1485548 (-) True G398665
TU472987 lncRNA upstream 15951 1677188 ~ 1679682 (-) False G398730
TU472985 lncRNA upstream 16096 1677333 ~ 1679682 (-) False G398730
TU472986 lncRNA upstream 16096 1677333 ~ 1679682 (-) False G398730
TU472988 lncRNA upstream 16096 1677333 ~ 1679682 (-) True G398730
TU472989 lncRNA upstream 16096 1677333 ~ 1679682 (-) False G398730
XM_026910204.2 mRNA downstream 9703 1639569 ~ 1649047 (-) True cbx7a
XM_034301643.1 mRNA downstream 67016 1565795 ~ 1591734 (-) True st13
XM_034301739.1 mRNA downstream 120077 1522507 ~ 1538673 (-) False LOC113524072
XM_034301738.1 mRNA downstream 120077 1522507 ~ 1538673 (-) True LOC113524072
XM_034301743.1 mRNA downstream 142454 1462120 ~ 1516296 (-) True LOC113524069
XM_034301521.1 mRNA upstream 22361 1683598 ~ 1690681 (-) True mief1
XM_026910171.2 mRNA upstream 65664 1726901 ~ 1729117 (-) True LOC113524053
XM_034301781.1 mRNA upstream 105467 1766704 ~ 1768749 (-) True LOC113524064
XM_034301455.1 mRNA upstream 147285 1808522 ~ 1809853 (-) True LOC117596405
XM_034301780.1 mRNA upstream 160446 1821683 ~ 1823769 (-) True LOC117596466
TU472900 other downstream 67021 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 196680 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 196680 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 341114 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 376979 1276653 ~ 1281771 (-) False LOC117596427
TU473233 other upstream 68853 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 164104 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 586923 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 711059 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1300476 2961713 ~ 2964157 (-) True G399490

Expression Profile