RNA id: TU472988


Basic Information

Item Value
RNA id TU472988
length 1955
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G398730
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1677188 ~ 1679682 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTATAATAAACAcgtttctttatttcagtttcataGCTGAAAGCCAGCGCAGTGCAAATCCAAGTCTCAGtgcaacaattaaaaaaaaataaaaaatcaaagtgGTCCTGATGATAATGAAATTCAGAGGCGCGCAAAAGTGTTTAATTCGTTCTGGAAATGAGGAAGCTGCACAATCTGTCAAacaagtatgaaaaaaaatcttgcaatTCCAGGAAGTCAGGAAGACCTTCAAACTGattcacctctttttttttttttttttttaaagaactagCTATATagaaaatatcaattttaaacaCGATTGTTTacgaaaacaaaaaacacacacattaatctcTGCATAGTTTTCATCCGAATGCTGTAATTCAGTCACATTCCCGCTTCTTTCTACTTCTTTAATCCATCACTAGCTCGATATATCGATAGAAAAAGAGACTctggtgagagaacgagtgtttctagctgctacaacgtaagtgacaacaggaactaacctgttgcACAAGACAttcagtgtaactataaacagataaaaattatttttcgtCATACTCGTACGTACATACTTGCccagactttttctttttttaaatgatgtcatGTTTCTCCTtttcaaaacatacaaaattatgaaaatctGCAGGATCTTTTTACAGGAAATTCGACTGTAACTTTTACCTGATGGTTTAATAGTCGAATATGTCCTCAGATTATATTCTCATTATTTAGAGCTCTTGTGATTGGACACATTTAAACAGAGCCAGAAAGGAAATTAAAGCCAGTCATGAGGTTACAGCGTGCTTAAGATCTCTGCAGTGCGTTTCAGGAAATaacattaaacacataaaacataaatgagACGATgatccagtgtttttttttttttttcaatccaaGCTCCtgatgctaatgttaatgttatttatttgacCTGTGCTGGTGTTCGTGGTACGGTTTGGTTTGGTAGCGTGACGTAGCCCTTAACTGCATGAGATCATCTCGCACTCGTACTCTTTTCAGAAACCATTTGCAGACTGTTTGTAAACTCTGTTTACAGAAATGTGGGAGAAtgaaacaggaatctgagttcACTActactacaaaacaaaaaaacaaaaaacccacagccTTGGTATTCAGGCTGAATGTGACTGAATGCGATTAAAGCTTACGATAAAAACCAGAACGCCAAACGAGCTGCTGTGATCTGTGACGGGatttggcgtgtgtgtgtgaggaagcgAGAACGAGACAATGATACTGTCCTGGGGCTTGTGAAGTTATTAACTTTACGCTGTTTTAGTGAAAAGTTCATATGAAAgcaaatatagaaaaaatgaaataacagaAATTTGAGTTGCATTTTGGGTGATGTTAGGAGTTACCCCGCTGAGTTACCCCACTGAGTTACCCCACTGAGTTACCCCATTGATTTACCCCACTGAGTTACCCCACTGAGTTACCCCACTGAGTTACCCCACTGAGTTACCCCATTGATTTACCCCACTGAGTTACCCCATTGAGTTACCCCATTGAGTTACCCCATTGATTTACCCCACTGAGTTACCCCATTGAGTTACTCCATTGAGTTACCCCATTGAGTTACCCCATTGAGTTACCCCATTGAGTTACCCCATTGAGTTTACCCCATTGAGTTACTCCATTGAGTTACCCCATTGAGTTACCCCACTGAGTTACCCCATTGAGTTACCCCATTGAGTTACTGAGTTACCCCACTGAGTTACCCCATTGAGTTACTCCATTGAGTTACCCCATTGAGTTACCCCATTGAGTTACTCCATTGAGTTACCCCATTGAGTTACTCCATTGAGTTACCCCATTGATTTACTCCCATTGAGTTACCCCATTGAGTTACTCCATTGAGTTACCCCACTGAGTTACCCCATTGAGTTACCCACTGAGTTACCCCACTGAGTTACCCCATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472969 lncRNA downstream 11842 1647700 ~ 1665491 (-) True G398718
TU472927 lncRNA downstream 16096 1658750 ~ 1661237 (-) True G398689
TU472936 lncRNA downstream 73347 1602236 ~ 1603986 (-) True G398697
TU472922 lncRNA downstream 98563 1566784 ~ 1578770 (-) True G398686
TU472901 lncRNA downstream 99955 1564459 ~ 1577378 (-) True G398667
TU472992 lncRNA upstream 11790 1691472 ~ 1691916 (-) True G398732
TU472993 lncRNA upstream 11983 1691665 ~ 1691916 (-) False G398732
TU473004 lncRNA upstream 35354 1715036 ~ 1716463 (-) True G398743
TU473015 lncRNA upstream 46438 1726120 ~ 1726528 (-) True G398751
TU473237 lncRNA upstream 101876 1781558 ~ 1835296 (-) False G398890
XM_026910204.2 mRNA downstream 28286 1639569 ~ 1649047 (-) True cbx7a
XM_034301643.1 mRNA downstream 85599 1565795 ~ 1591734 (-) True st13
XM_034301739.1 mRNA downstream 138660 1522507 ~ 1538673 (-) False LOC113524072
XM_034301738.1 mRNA downstream 138660 1522507 ~ 1538673 (-) True LOC113524072
XM_034301744.1 mRNA downstream 161037 1462120 ~ 1516296 (-) False LOC113524069
XM_034301521.1 mRNA upstream 3916 1683598 ~ 1690681 (-) True mief1
XM_026910171.2 mRNA upstream 47219 1726901 ~ 1729117 (-) True LOC113524053
XM_034301781.1 mRNA upstream 87022 1766704 ~ 1768749 (-) True LOC113524064
XM_034301455.1 mRNA upstream 128840 1808522 ~ 1809853 (-) True LOC117596405
XM_034301780.1 mRNA upstream 142001 1821683 ~ 1823769 (-) True LOC117596466
TU472900 other downstream 85604 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 215263 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 215263 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 359697 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 395562 1276653 ~ 1281771 (-) False LOC117596427
TU473233 other upstream 50408 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 145659 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 568478 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 692614 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1282031 2961713 ~ 2964157 (-) True G399490

Expression Profile