RNA id: TU473004


Basic Information

Item Value
RNA id TU473004
length 1202
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G398743
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1715036 ~ 1716463 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGAAGTCATGAAGTGGAACAGCAGTTAGTGACCTCAGTAGGGTGATTTGGGAGACATCCATGTGGACGAGGCAGAAAAACCCAGTTCAGTTCAGCTGCTTAATCATTTCCTTTCTGCTTTTATGCATTTTcccatacagtatattcactcAAGATATTATCCAGTAGGAGATTTATATTATCATGTATACAGAGAGTTTGGATGTGTGTATAAAGAGAAAgtaaacagtgtgtatgtatagattttctctttatttgcttcaacacaaaggaaaaaaaaaaacaagtctgttctatcaatttaaaattattattattattattattgctgcttATATGATGCAAATGATAATAAGAAAATAGTTGCTGTAAATGTTGTAAACTTGACAGTGGAGACAACAATAGCAGATGAGCACATTACTACACCTGAGTAAACTGTAGCTATGCTAGTTTAAACCATTCAGTACGTAGTGCACTCGGTTTGTGAACTACGGAGGGTCCTTCAGCTTTTTAATTACATACAACAGATTAGTGAATTTTACAGAAGAATATAAATGTAGTGTAAAGGTTTAAAATCAGTAACGCTaagtttatccatttatattctCCTGTACAAGAGTTCACTTCCTGTCTTTACTGTGAATTATAAAACATGGGCAAATAGCTAGTTAGATAAAAGCGATACACCAGGCActgatttaacacatttaaagtgCACTTTCACACCGTTCTGATCTAAAACCCAAGCTGAGTTACTTATTGTTTCATCTCTCGCTGCTTTTTGCCTTTCCCCTCAGAGATGATGTGCTCCGGCGCCGCCCTGAAGAACCACTCGGACCACGAGCCGTCGTACACGCACACGTCCGGGTGTCCACACAGGTGTGCTGCGAGAGCGATGTGACACGCCGTGACCCCCGAACCACACGTCACACTGAAGGGCTTCTGAAGGTCGACGCCTGCATCTCGGAACATCTCCATCAGCTCCTCCACCGGACGCTCCAGTCCCAAAGAGTCcatgaaggaaggaaagggCATGTTGATGCTGCCGGGGATGTGACCGGGTTCtgtgcctgagagagagagagagagagacagacagaaagagacagagagagagagagtcagagacagagagagagagagagatttcaagCCACTTTTATTACAATACATCAAATACAACAGCCACAAGTTAagtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472992 lncRNA downstream 23120 1691472 ~ 1691916 (-) True G398732
TU472993 lncRNA downstream 23120 1691665 ~ 1691916 (-) False G398732
TU472986 lncRNA downstream 35354 1677333 ~ 1679682 (-) False G398730
TU473015 lncRNA upstream 9657 1726120 ~ 1726528 (-) True G398751
TU473237 lncRNA upstream 65095 1781558 ~ 1835296 (-) False G398890
TU473238 lncRNA upstream 109134 1825597 ~ 1835296 (-) False G398890
TU473234 lncRNA upstream 116353 1832816 ~ 1864843 (-) False G398890
XR_004577585.1 lncRNA upstream 158736 1875199 ~ 1876420 (-) True LOC117596467
XM_034301521.1 mRNA downstream 24355 1683598 ~ 1690681 (-) True mief1
XM_026910204.2 mRNA downstream 65989 1639569 ~ 1649047 (-) True cbx7a
XM_034301643.1 mRNA downstream 123302 1565795 ~ 1591734 (-) True st13
XM_034301739.1 mRNA downstream 176363 1522507 ~ 1538673 (-) False LOC113524072
XM_026910171.2 mRNA upstream 10438 1726901 ~ 1729117 (-) True LOC113524053
XM_034301781.1 mRNA upstream 50241 1766704 ~ 1768749 (-) True LOC113524064
XM_034301455.1 mRNA upstream 92059 1808522 ~ 1809853 (-) True LOC117596405
XM_034301780.1 mRNA upstream 105220 1821683 ~ 1823769 (-) True LOC117596466
XM_026910160.2 mRNA upstream 142419 1858882 ~ 1860957 (-) True LOC113524043
TU472900 other downstream 123307 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 252966 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 252966 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 397400 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 433265 1276653 ~ 1281771 (-) False LOC117596427
TU473233 other upstream 13627 1730090 ~ 1864843 (-) True G398890
TU473235 other upstream 108878 1825341 ~ 1881058 (-) False G398890
trnad-guc_31 other upstream 531697 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 655833 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1245250 2961713 ~ 2964157 (-) True G399490

Expression Profile