RNA id: TU473238


Basic Information

Item Value
RNA id TU473238
length 2024
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G398890
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 1730090 ~ 1881058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttgatCAATTTTTGACAATTGTGGTAATCATGGCTTTTCAAATTAGCTCGTATTAGTACATTAgctaagtatttcttttttttattatcaaagACAATATATCTATGAGAAGCAACAGACTCTCATGGCATTAACAATCTACTGAATTAGAATTAGTGCAGATGTGTAGTGAGTCATAAGCATTCagttttattgattaaaaaaaaacacaaagtgagaATTTAGTGTAtaaagcattttgaaaaattgttcgaataaaaaaaatgaacagaatcaCAACATAATGTTACTCCGATCAACAGCAGATGGCGCTGTAGGGCAAGATTTCTCcttaagagagacagacagtgtcagaaagacagaaagagacagacaggtgtctGTACCAGGAATTGAAGTGGCGCATTGCTCTGCTTCCAGTATGACGTTTCCAGTGACTTTGACCCTGACCTGAACCAGGACACTGCAGGGATCCAGTTACTCCAGTGACCTTGAAACTCTTTCCAATTGTTTggcttaatattaatatttgtaatatgaGTGCAGTTAGAATGGAAGGTTTAAAGTGAGTTAattaaatgtgacaaaatgtgtGAATGATACGATGCAAGCTGATCCAAGAATATTTTCCAGTCAACtgcaaaataatattatgtAAAGTCTTACATAAAGtcttacataaaatattatgtaatgtaAGAAATTACCAATGTAAGTTTAAGTAAAATAATTCcctataaaacatattttacaacGAGACTGAATAGCAATACTGCGATAATATATTGCATTTATTACATGCTTTACGTGTTTCGATATAAAAAAagtagaattttttattttcatttcatttttcatttcattcactcAGGCGTAGtctgcttcctcttcctctgtgaATCCACTTTGAACAGCTGCTTGAATGCTCTTTATCTCTTCTGGAGCAGCAGCAGGGAGAATAGCGAGCAACTCTTTGTCAATCTTCTCCAGTCTTGCAGCACTCTTCCTTTCAAACTCATTCTTGTTCTTGAGGACGAGGCGTAAGATGGCTTTCTGGGCCTCATCACAGGAGCTCTGTAACTGCAGACGCTCAGAAAGAAACTCTGGCTTTTCCTTGTCCATGGCCATCAGTTTCCCCAGAGAGCTGACACGATCCACGATGTGATTGGTGGACACCTCGGTGTAGGTTGCTGAGATCATGTGGACGAGGCTGGCGATGTTAGTGATACTTTGCTAGTTCTGCACAGATTGTAATGCCCTCATCACAAATGTTTCGGGCATCAGTTTTTGCTTTGCAGTTTGGGCTTTTTTCTAAACTTTCCTTGATTCTTTTGAACTGATCTGCCTGGAAATCTGTTAATGTAGCTTTATTCTTCTGATCATACAAGTCTTTCCAGTTAATAGTGTTGTCCTGCACAAACTCTTGTACATTCACTGTGCACATCAGGATTTCTGCAGATTtgctataaatattaattacaccAATACCATCAACAGCAGATTCTTTATCTTTAATGTGATGCTTTGTATCAGCAATTGTTCTGGAAGCATTACAAAGTAGATTCACTGGCTGGGTAATCACAGCTGTTACTCCATTAATAAGAGATGTGATGCCCTCAGTCAAACCTGCGACAAAATCCATACCAATCATCTCCCATCCACCGGGTAGTGAATCCATTGCTTCTTTGTAACCTGCATGTGCTTCCTTAAGTTGGTCTTCCATGGCTTTCATTGCTTTCTCTGAGCGTTTAGTAGCTTCTTCTGATGACTGTTTCCTCATCTTGGCCTCATCCAGTTTCCTCTTGATAGCATCCAGCTCCTCCCCATAAAAGTGCTCAGCATTTACACATGCTTCCAGCAGTTCCTGGATAATATTGATGACATCAGTGAAccgcttttctgttgcattgGCCAACTCAAGACAGTCATCTGCAATGACACGAATGTTCTCCAGCTGGTCAGGAAGGTGGGCTTCAACAACCTCATCATTGTCTTGGAACAGGATCTTCACAGCCACCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473015 lncRNA downstream 99069 1726120 ~ 1726528 (-) True G398751
TU473004 lncRNA downstream 109134 1715036 ~ 1716463 (-) True G398743
TU472992 lncRNA downstream 133681 1691472 ~ 1691916 (-) True G398732
TU472993 lncRNA downstream 133681 1691665 ~ 1691916 (-) False G398732
TU472983 lncRNA downstream 145915 1677917 ~ 1679682 (-) False G398730
XR_004577585.1 lncRNA upstream 39903 1875199 ~ 1876420 (-) True LOC117596467
TU473273 lncRNA upstream 116625 1951921 ~ 1952184 (-) True G398922
TU473276 lncRNA upstream 120750 1956046 ~ 1959562 (-) True G398925
TU473294 lncRNA upstream 162790 1998086 ~ 1998681 (-) True G398942
TU473287 lncRNA upstream 195872 2031168 ~ 2032632 (-) True G398935
XM_034301780.1 mRNA downstream 1828 1821683 ~ 1823769 (-) True LOC117596466
XM_034301455.1 mRNA downstream 15744 1808522 ~ 1809853 (-) True LOC117596405
XM_034301781.1 mRNA downstream 56848 1766704 ~ 1768749 (-) True LOC113524064
XM_026910171.2 mRNA downstream 96480 1726901 ~ 1729117 (-) True LOC113524053
XM_034301521.1 mRNA downstream 134916 1683598 ~ 1690681 (-) True mief1
XM_026910160.2 mRNA upstream 23586 1858882 ~ 1860957 (-) True LOC113524043
XM_034301779.1 mRNA upstream 37623 1872919 ~ 1875037 (-) False LOC113524042
XM_026910159.2 mRNA upstream 37623 1872919 ~ 1875008 (-) True LOC113524042
XM_026910212.2 mRNA upstream 80994 1916290 ~ 1932126 (-) False LOC113524085
XM_026910211.2 mRNA upstream 80994 1916290 ~ 1932126 (-) True LOC113524085
TU472900 other downstream 233868 1569003 ~ 1591729 (-) False st13
XR_004577580.1 other downstream 363527 1461324 ~ 1462070 (-) False LOC117596459
XR_004577579.1 other downstream 363527 1461354 ~ 1462070 (-) False LOC117596459
TU472657 other downstream 507961 1276653 ~ 1317636 (-) False LOC117596427
TU472656 other downstream 543826 1276653 ~ 1281771 (-) False LOC117596427
trnad-guc_31 other upstream 412864 2248160 ~ 2248231 (-) True trnad-guc_31
TU473396 other upstream 537000 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 1126417 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 1334038 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 1367994 3203290 ~ 3275955 (-) False G399489

Expression Profile