RNA id: TU473377


Basic Information

Item Value
RNA id TU473377
length 1019
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G399016
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2262604 ~ 2347812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcgTCGTGGTGGAAGGGCAGCTTCATGGGGTTCTCCAGCAGGGATTTAAGGACTCCGTGGGTCGGAGGAAGGAAAGCGGAGTTGACGGGCCGCGACATTTTCTCCATCGCTGCGCGCGAGCGACACGGTTTAATCCTCcgggaaaaataataataataataataataataataataaaaaaaaaaaaaaagaaaaagaaaaacttgacAGAAGAAAAGAGGTTTCCTAACCGAATATGAAGACGAGCGAGTGTCCGATATCCTCCGCAGCTGGTCTGTTTGACGTATAATTCCATGGAAATTAATTTGTCTCTATAAATGTCCACAAagtacacaaaaaaaagcaaaaatgtgcGCTCCACATAACAAAATACTGCATATCTCACTGTgtgatcctgtgtgtgtttgagggctTAGCTGCCAGAAAGAGTTGATCCCTTTAGTTGACAAATAAAGCTATAAACtacgcaaaacacacacacacacacacacacacacaccctctctgtCGTCAGGTTGTCGGTCGTCTCTGGTGAGTCGTGTTACAGATGAGCTGCCGAGGTGCGGAATGTGGAGGAGACGCTGGACACAACGCAGACACGAGCTGAACTCCTGATTCTGGTGGAAAtcacgtgcgtgtgtgtgtgtttgtaccatctcactcactttctctctcacacacacacacacacacacacacacacacacacaggcaagtGAGTACAGACAGGTGAGCTCAGATCACAGGTGtagtctgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagctggGCGACATGATGACATGATCCTAACGTTGCTGTAAATTACATCATAACACACTTTTCTCAGCTTCTGGGAGAAAAACCGAAAGAGAAGGAGagttagagagtgagagagagaaaaagaaagaggaatgaGATGCAAGACAAAGAAGGGGAGAGAAgggtgaaagaaagagagagggaaagggcgcgagagagagagagagagagacggatggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473308 lncRNA downstream 225767 2040301 ~ 2040923 (-) True G398953
TU473287 lncRNA downstream 234058 2031168 ~ 2032632 (-) True G398935
TU473294 lncRNA downstream 268009 1998086 ~ 1998681 (-) True G398942
TU473276 lncRNA downstream 307128 1956046 ~ 1959562 (-) True G398925
TU473273 lncRNA downstream 314506 1951921 ~ 1952184 (-) True G398922
TU473427 lncRNA upstream 12280 2343971 ~ 2345042 (-) True G399054
TU473430 lncRNA upstream 27693 2359384 ~ 2365511 (-) False mmd
TU473431 lncRNA upstream 27693 2359384 ~ 2377631 (-) False mmd
TU473502 lncRNA upstream 214773 2546464 ~ 2547110 (-) True G399118
TU473635 lncRNA upstream 377266 2708957 ~ 2709168 (-) True G399245
XM_034301693.1 mRNA downstream 254698 2008006 ~ 2011992 (-) True tmem220
XM_026910199.2 mRNA downstream 259413 2003622 ~ 2007277 (-) True mrps7
XM_034301787.1 mRNA downstream 284134 1979258 ~ 1982556 (-) True jmjd8
XM_034301726.1 mRNA downstream 296258 1962730 ~ 1970432 (-) True LOC117596454
XM_034301671.1 mRNA upstream 23218 2354909 ~ 2365507 (-) True mmd
XM_026910059.2 mRNA upstream 65725 2397416 ~ 2402161 (-) True tmem100a
XM_026910081.2 mRNA upstream 167288 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA upstream 167288 2498979 ~ 2507140 (-) True cbx2
XM_026910082.2 mRNA upstream 167288 2498979 ~ 2506756 (-) False cbx2
trnad-guc_31 other downstream 18459 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 385632 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 401847 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 674961 1569003 ~ 1591729 (-) False st13
XR_004577579.1 other downstream 804620 1461354 ~ 1462070 (-) False LOC117596459
TU473396 other upstream 40605 2372296 ~ 2426606 (-) True G399028
TU473971 other upstream 630022 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 837643 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 871599 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 892409 3224100 ~ 3234301 (-) False LOC113525126

Expression Profile