RNA id: TU473635


Basic Information

Item Value
RNA id TU473635
length 212
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G399245
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2708957 ~ 2709168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTGAACAGCATTAGTATAGCTAACGTGAGTTATTGCAGGGTTGTCAGCTAATCTGTGCAAGTGGAGAAATGACTATTGGAAATAATGGAATTATAATGGAATGCCTTGCAAATGCTACAAGTGTACAGCCATGTGTTGGAGCTGAGTAATTGGGCACTGCTTTATGTCTTCAACTTGTGAAGTTTGGAAGTAAACATTCTAAAATTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473502 lncRNA downstream 161847 2546464 ~ 2547110 (-) True G399118
TU473431 lncRNA downstream 331326 2359384 ~ 2377631 (-) False mmd
TU473430 lncRNA downstream 343446 2359384 ~ 2365511 (-) False mmd
TU473376 lncRNA downstream 361145 2266690 ~ 2347812 (-) True G399016
TU473642 lncRNA upstream 14153 2723321 ~ 2723543 (-) True G399252
TU473690 lncRNA upstream 93245 2802413 ~ 2802629 (-) True G399300
TU473706 lncRNA upstream 116664 2825832 ~ 2826047 (-) True G399316
TU473718 lncRNA upstream 150577 2859745 ~ 2860121 (-) True G399328
TU473722 lncRNA upstream 155529 2864697 ~ 2864936 (-) True G399332
XM_026910075.2 mRNA downstream 184778 2517791 ~ 2524179 (-) True LOC113523971
XM_026910081.2 mRNA downstream 201816 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA downstream 201817 2498979 ~ 2507140 (-) True cbx2
XM_026910082.2 mRNA downstream 202201 2498979 ~ 2506756 (-) False cbx2
XM_026910059.2 mRNA downstream 306796 2397416 ~ 2402161 (-) True tmem100a
XM_034301609.1 mRNA upstream 204866 2914034 ~ 3079229 (-) True LOC113523961
XM_034301457.1 mRNA upstream 370066 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_034301633.1 mRNA upstream 409167 3118335 ~ 3295290 (-) False LOC113525116
XM_034301635.1 mRNA upstream 409167 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA upstream 409167 3118335 ~ 3137575 (-) False LOC113525116
TU473396 other downstream 282351 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 460726 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 827899 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 844114 1730090 ~ 1864843 (-) True G398890
TU472900 other downstream 1117228 1569003 ~ 1591729 (-) False st13
TU473971 other upstream 252545 2961713 ~ 2964157 (-) True G399490
trnay-gua_7 other upstream 460166 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 494122 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 514932 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 555545 3264713 ~ 3275955 (-) False G399489

Expression Profile