RNA id: TU473974


Basic Information

Item Value
RNA id TU473974
length 1109
lncRNA type intronic
GC content 0.41
exon number 3
gene id G399491
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 2957236 ~ 3046512 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtaaattatattgtatttatatattcatttcttCAAAATGTACCGTATTTGATACCATCAAAAAAACAGGGATCAGCTATCAGAGAAAACGAAGAACATAGgtctgatcctgtaacaaaagATCTCAATTATATTAAACCAAAGGACAAAGTGATAAACGTGACTTGTAGCGAGTCTCCTAGGAGCTTCCTCACATAAACTCCTCAGATGCCAAGTCCTGTGAGAATCCCACCAATGTCTTGAAACTGCTCCTGTCCATTTCAGCTCCATCTTCCACTGACTGGGTTCAGTTCCAATTCGTGTGGTTTTTCACCTGCTCTTCCAAATTATTCCCTCAGGTTTTCTCTGGGATTGAGGAAATTATTGTAGAATTGTGTGTAGTCTAATCAAAATCCAGTGTCTGTAGTTTGTAATGTTCATCATTCTTCagagcagagagacacttcactcctgTGTATCCTATTTTATTCCCAGACAGAtacagttctctcaggtgtgaggggtttgatctcagagctgaagccagagcagcacagccttcatctgagacacCACAACGAACCAACCTGCagagacacaatgacacacacttcatcaacactttcattttggtttaaaaCTTACTTTAAAGATGATGTGTGTGGGATTTTATCATTCAGAATGACATGAGGATTTAATATCATCCGTTTATTCTAATTAACAATGTGCCtcgtttatcaagctggatatgaacaggcttgtgtgtaaattgtttgtatgagtgtttacacaagaaattttgtATTCACGAAAGTCCTGTTAATTCGTATTCTACTCTTGCTCCAGAGTCTGTGTACATTTATGCATAAGACgatgcctttatttgtcacatctACATTTTCTTTGCGTTGCCCAgtttgttaggaagttggggtcagagcgcagggtcagccatgatacagggCCCCTGGAGCacagagggttaagggccttgctaaagagcccaaccttctgatcagtaacccataGATTTAACTGTTGCACCACCACTCACCCAAACTAACTAATGAAAACCTTGACTTGGGGACTTCCGGGTTGGACATCGACAAGATGGCAGCATAGAGCTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473980 lncRNA downstream 6162 3027698 ~ 3035655 (-) False G399492
TU473981 lncRNA downstream 6162 3031407 ~ 3035655 (-) True G399492
TU473944 lncRNA downstream 18139 3017290 ~ 3023678 (-) True G399489
TU473978 lncRNA downstream 39023 2957236 ~ 3002794 (-) False G399491
TU473985 lncRNA downstream 42361 2993840 ~ 2999456 (-) True G399496
TU473993 lncRNA upstream 100787 3147299 ~ 3156012 (-) False LOC113525117
TU473994 lncRNA upstream 100787 3147299 ~ 3155016 (-) False LOC113525117
TU473995 lncRNA upstream 100787 3147299 ~ 3196563 (-) False LOC113525117
TU473997 lncRNA upstream 108163 3154675 ~ 3155016 (-) False LOC113525117
TU474026 lncRNA upstream 121365 3167877 ~ 3168603 (-) True G399532
XM_026910075.2 mRNA downstream 517638 2517791 ~ 2524179 (-) True LOC113523971
XM_026910081.2 mRNA downstream 534676 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA downstream 534677 2498979 ~ 2507140 (-) True cbx2
XM_026910082.2 mRNA downstream 535061 2498979 ~ 2506756 (-) False cbx2
XM_026910059.2 mRNA downstream 639656 2397416 ~ 2402161 (-) True tmem100a
XM_034301457.1 mRNA upstream 32722 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_034301633.1 mRNA upstream 71823 3118335 ~ 3295290 (-) False LOC113525116
XM_034301635.1 mRNA upstream 71823 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA upstream 71823 3118335 ~ 3137575 (-) False LOC113525116
XM_034301631.1 mRNA upstream 71823 3118335 ~ 3137575 (-) False LOC113525116
TU473971 other downstream 77660 2961713 ~ 2964157 (-) True G399490
TU473396 other downstream 615211 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 793586 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1160759 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 1176974 1730090 ~ 1864843 (-) True G398890
trnay-gua_7 other upstream 122822 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 156778 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 177588 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 218201 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 227328 3273840 ~ 3275955 (-) False G399489

Expression Profile