RNA id: TU473981


Basic Information

Item Value
RNA id TU473981
length 868
lncRNA type intronic
GC content 0.41
exon number 2
gene id G399492
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3027698 ~ 3035655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATCGATAGGAGTGAAAACAACTGGAGTGGTTAGCGAACAACTGTGAAAAATGGCAGAAGGTCGTCAGTGGCCTCTGATccccagagggaaaaaaaggaagtatGAGACTCATAAATTTACAGTGAAGTCCACTGGGCTGCTTCTGTAaagcagatctggcaaccctttTCATAAGGggtttaattctttaaaaaacttctcattttaatttacaaattctATATTTGAgatcatttccaccatttcccTTCTGCTATTAAACCTGCAGCTGCCACACAGCGGATGTAGTTTGTGTCCCAGGTGCACTTTGTGTGATTAGTTACAATGTTTTAGtcaattttacagtaattttagACACACTGAAGTCGCATCAAGTCACGTTTTGTGCTGCAGCTTCTCACATACGTACATCTGACCCAAAGACTCATCAGTGACAAATCATCAGTGtgcagtgaaaagaaacaatcTTCCTCCTCAGGACATTGATGATGAACCTAAAACCTCTGCTTCACTCTCACTATTAGAGAATGTGTcttactgaggagcaggtcatgtgactctcagagagatgatcttacctcagtttctccagtttacagtgaggattctccagtacagcagagacacacttcactcctgagtctcctagATTATTCTGACACAGATTCAggtctctcaggtgtgaggggtttgatctcagagctgaagtcagagcagcacagccttcatctgagacacCACAACGAACCAACCTGCagagacacaatgacacacacttcatcaacacagtttcattttggtttaaaaCTTACTTTAAAGATGATGTGTGTGggattttattattcagaatgacatgaggatttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473944 lncRNA downstream 7729 3017290 ~ 3023678 (-) True G399489
TU473978 lncRNA downstream 28613 2957236 ~ 3002794 (-) False G399491
TU473985 lncRNA downstream 31951 2993840 ~ 2999456 (-) True G399496
TU473975 lncRNA downstream 43018 2957236 ~ 2988389 (-) False G399491
TU473738 lncRNA downstream 128656 2898608 ~ 2902751 (-) True G399348
TU473974 lncRNA upstream 6162 3041817 ~ 3046512 (-) True G399491
TU473993 lncRNA upstream 111644 3147299 ~ 3156012 (-) False LOC113525117
TU473994 lncRNA upstream 111644 3147299 ~ 3155016 (-) False LOC113525117
TU473995 lncRNA upstream 111644 3147299 ~ 3196563 (-) False LOC113525117
TU473997 lncRNA upstream 119020 3154675 ~ 3155016 (-) False LOC113525117
XM_026910075.2 mRNA downstream 507228 2517791 ~ 2524179 (-) True LOC113523971
XM_026910081.2 mRNA downstream 524266 2498979 ~ 2507141 (-) False cbx2
XM_026910080.2 mRNA downstream 524267 2498979 ~ 2507140 (-) True cbx2
XM_026910082.2 mRNA downstream 524651 2498979 ~ 2506756 (-) False cbx2
XM_026910059.2 mRNA downstream 629246 2397416 ~ 2402161 (-) True tmem100a
XM_034301457.1 mRNA upstream 43579 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_034301633.1 mRNA upstream 82680 3118335 ~ 3295290 (-) False LOC113525116
XM_034301635.1 mRNA upstream 82680 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA upstream 82680 3118335 ~ 3137575 (-) False LOC113525116
XM_034301631.1 mRNA upstream 82680 3118335 ~ 3137575 (-) False LOC113525116
TU473971 other downstream 67250 2961713 ~ 2964157 (-) True G399490
TU473396 other downstream 604801 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 783176 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1150349 1825341 ~ 1881058 (-) False G398890
TU473233 other downstream 1166564 1730090 ~ 1864843 (-) True G398890
trnay-gua_7 other upstream 133679 3169334 ~ 3169421 (-) True trnay-gua_7
TU473964 other upstream 167635 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 188445 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 229058 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 238185 3273840 ~ 3275955 (-) False G399489

Expression Profile