RNA id: TU474031


Basic Information

Item Value
RNA id TU474031
length 250
lncRNA type read_through
GC content 0.34
exon number 2
gene id G399537
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3185836 ~ 3194908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgtgcattaatataaacctgtgatttacactGTTGTTAGCTTCCTCCATGTGCTGCTAATCGAGTGCAGGTCTATGGAGAGATGAAGGTCTTAAACTCCATTTACGTTCAACAGATTTTCACAAGGTTTGCTTTATTACAGATGTCACACATTTCTGCATAATGTCAAGAGACattgtgtttaaattttaagtGGATTTATGCACTCGaagtatattaaaaacaaaaatgcttgAAAAACATATTTTCC

Function

GO:

id name namespace
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0030900 forebrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474026 lncRNA downstream 17233 3167877 ~ 3168603 (-) True G399532
TU473993 lncRNA downstream 29824 3147299 ~ 3156012 (-) False LOC113525117
TU473994 lncRNA downstream 30820 3147299 ~ 3155016 (-) False LOC113525117
TU473997 lncRNA downstream 30820 3154675 ~ 3155016 (-) False LOC113525117
TU473974 lncRNA downstream 139324 3041817 ~ 3046512 (-) True G399491
TU474024 lncRNA upstream 40735 3235643 ~ 3249326 (-) True G399530
TU474035 lncRNA upstream 48649 3243557 ~ 3245044 (-) True G399541
TU474037 lncRNA upstream 78648 3273556 ~ 3274842 (-) True G399543
TU473948 lncRNA upstream 91147 3286055 ~ 3291628 (-) False G399489
TU473957 lncRNA upstream 91674 3286582 ~ 3295273 (-) False G399489
XM_034301635.1 mRNA downstream 48261 3118335 ~ 3137575 (-) False LOC113525116
XM_034301634.1 mRNA downstream 48261 3118335 ~ 3137575 (-) False LOC113525116
XM_034301631.1 mRNA downstream 48261 3118335 ~ 3137575 (-) False LOC113525116
XM_034301632.1 mRNA downstream 48263 3118335 ~ 3137573 (-) True LOC113525116
XM_034301457.1 mRNA downstream 73584 3079234 ~ 3112252 (-) True si:ch211-108d22.2
XM_026911562.2 mRNA upstream 12000 3206908 ~ 3222780 (-) True jpt1b
XM_026911585.2 mRNA upstream 29157 3224065 ~ 3234324 (-) True LOC113525126
XM_034301458.1 mRNA upstream 55178 3250086 ~ 3293868 (-) True LOC113534415
XM_034301771.1 mRNA upstream 101011 3295919 ~ 3309397 (-) False gga3b
XM_034301770.1 mRNA upstream 101011 3295919 ~ 3309397 (-) True gga3b
trnay-gua_7 other downstream 16415 3169334 ~ 3169421 (-) True trnay-gua_7
TU473971 other downstream 221679 2961713 ~ 2964157 (-) True G399490
TU473396 other downstream 759230 2372296 ~ 2426606 (-) True G399028
trnad-guc_31 other downstream 937605 2248160 ~ 2248231 (-) True trnad-guc_31
TU473235 other downstream 1304778 1825341 ~ 1881058 (-) False G398890
TU473964 other upstream 8382 3203290 ~ 3275955 (-) False G399489
TU474032 other upstream 29192 3224100 ~ 3234301 (-) False LOC113525126
TU473965 other upstream 69805 3264713 ~ 3275955 (-) False G399489
TU473969 other upstream 78932 3273840 ~ 3275955 (-) False G399489
trnae-cuc_42 other upstream 116453 3311361 ~ 3311432 (-) True trnae-cuc_42

Expression Profile