Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU474142 |
| length | 386 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC113534314 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 3360671 ~ 3363611 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU473957 | lncRNA | downstream | 65401 | 3286582 ~ 3295273 (-) | False | G399489 |
| TU473948 | lncRNA | downstream | 69046 | 3286055 ~ 3291628 (-) | False | G399489 |
| TU474037 | lncRNA | downstream | 85832 | 3273556 ~ 3274842 (-) | True | G399543 |
| TU474024 | lncRNA | downstream | 111348 | 3235643 ~ 3249326 (-) | True | G399530 |
| TU474150 | lncRNA | upstream | 51369 | 3414965 ~ 3431282 (-) | True | G399629 |
| XR_004577577.1 | lncRNA | upstream | 151216 | 3514812 ~ 3516233 (-) | True | LOC117596450 |
| TU474294 | lncRNA | upstream | 197552 | 3561148 ~ 3562361 (-) | True | G399727 |
| TU474308 | lncRNA | upstream | 221305 | 3584901 ~ 3585214 (-) | True | G399738 |
| TU474312 | lncRNA | upstream | 237450 | 3601046 ~ 3635560 (-) | True | G399742 |
| XM_034301771.1 | mRNA | downstream | 51277 | 3295919 ~ 3309397 (-) | False | gga3b |
| XM_034301770.1 | mRNA | downstream | 51277 | 3295919 ~ 3309397 (-) | True | gga3b |
| XM_034301772.1 | mRNA | downstream | 53501 | 3295919 ~ 3307173 (-) | False | gga3b |
| XM_034301458.1 | mRNA | downstream | 66806 | 3250086 ~ 3293868 (-) | True | LOC113534415 |
| XM_026911585.2 | mRNA | downstream | 126350 | 3224065 ~ 3234324 (-) | True | LOC113525126 |
| XM_026927230.2 | mRNA | upstream | 18518 | 3382114 ~ 3403530 (-) | True | evplb |
| XM_026927232.2 | mRNA | upstream | 18518 | 3382114 ~ 3394690 (-) | False | evplb |
| XM_026926985.2 | mRNA | upstream | 55784 | 3419380 ~ 3427527 (-) | True | atg4db |
| XM_034301543.1 | mRNA | upstream | 70132 | 3433728 ~ 3464801 (-) | False | mast1b |
| XM_034301542.1 | mRNA | upstream | 70132 | 3433728 ~ 3464801 (-) | True | mast1b |
| trnae-cuc_42 | other | downstream | 49242 | 3311361 ~ 3311432 (-) | True | trnae-cuc_42 |
| TU473964 | other | downstream | 84719 | 3203290 ~ 3275955 (-) | False | G399489 |
| XR_003403516.2 | other | upstream | 760653 | 4124249 ~ 4132922 (-) | False | LOC113534693 |
| XR_004577542.1 | other | upstream | 1597506 | 4961102 ~ 5008461 (-) | False | sept7a |
| TU475643 | other | upstream | 2223802 | 5587398 ~ 5589747 (-) | True | G400815 |
| TU476079 | other | upstream | 2809392 | 6172988 ~ 6175260 (-) | True | G401205 |
| TU476305 | other | upstream | 3008054 | 6371650 ~ 6374490 (-) | False | polr1h |
