Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577534.1 |
| length | 405 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC113534314 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 3360671 ~ 3363611 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU473957 | lncRNA | downstream | 65398 | 3286582 ~ 3295273 (-) | False | G399489 |
| TU473948 | lncRNA | downstream | 69043 | 3286055 ~ 3291628 (-) | False | G399489 |
| TU474037 | lncRNA | downstream | 85829 | 3273556 ~ 3274842 (-) | True | G399543 |
| TU474024 | lncRNA | downstream | 111345 | 3235643 ~ 3249326 (-) | True | G399530 |
| TU474035 | lncRNA | downstream | 115627 | 3243557 ~ 3245044 (-) | True | G399541 |
| TU474150 | lncRNA | upstream | 51354 | 3414965 ~ 3431282 (-) | True | G399629 |
| XR_004577577.1 | lncRNA | upstream | 151201 | 3514812 ~ 3516233 (-) | True | LOC117596450 |
| TU474294 | lncRNA | upstream | 197537 | 3561148 ~ 3562361 (-) | True | G399727 |
| TU474308 | lncRNA | upstream | 221290 | 3584901 ~ 3585214 (-) | True | G399738 |
| TU474312 | lncRNA | upstream | 237435 | 3601046 ~ 3635560 (-) | True | G399742 |
| XM_034301771.1 | mRNA | downstream | 51274 | 3295919 ~ 3309397 (-) | False | gga3b |
| XM_034301770.1 | mRNA | downstream | 51274 | 3295919 ~ 3309397 (-) | True | gga3b |
| XM_034301772.1 | mRNA | downstream | 53498 | 3295919 ~ 3307173 (-) | False | gga3b |
| XM_034301633.1 | mRNA | downstream | 65381 | 3118335 ~ 3295290 (-) | False | LOC113525116 |
| XM_034301458.1 | mRNA | downstream | 66803 | 3250086 ~ 3293868 (-) | True | LOC113534415 |
| XM_026927230.2 | mRNA | upstream | 18503 | 3382114 ~ 3403530 (-) | True | evplb |
| XM_026927232.2 | mRNA | upstream | 18503 | 3382114 ~ 3394690 (-) | False | evplb |
| XM_026926985.2 | mRNA | upstream | 55769 | 3419380 ~ 3427527 (-) | True | atg4db |
| XM_034301543.1 | mRNA | upstream | 70117 | 3433728 ~ 3464801 (-) | False | mast1b |
| XM_034301542.1 | mRNA | upstream | 70117 | 3433728 ~ 3464801 (-) | True | mast1b |
| trnae-cuc_42 | other | downstream | 49239 | 3311361 ~ 3311432 (-) | True | trnae-cuc_42 |
| TU473964 | other | downstream | 84716 | 3203290 ~ 3275955 (-) | False | G399489 |
| TU473965 | other | downstream | 84716 | 3264713 ~ 3275955 (-) | False | G399489 |
| TU473969 | other | downstream | 84716 | 3273840 ~ 3275955 (-) | False | G399489 |
| TU474032 | other | downstream | 126370 | 3224100 ~ 3234301 (-) | False | LOC113525126 |
| XR_003403516.2 | other | upstream | 760638 | 4124249 ~ 4132922 (-) | False | LOC113534693 |
| XR_004577542.1 | other | upstream | 1597491 | 4961102 ~ 5008461 (-) | False | sept7a |
| TU475643 | other | upstream | 2223787 | 5587398 ~ 5589747 (-) | True | G400815 |
| TU476079 | other | upstream | 2809377 | 6172988 ~ 6175260 (-) | True | G401205 |
| TU476305 | other | upstream | 3008039 | 6371650 ~ 6374490 (-) | False | polr1h |
