Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU474150 |
| length | 885 |
| lncRNA type | sense_over |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G399629 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 3414965 ~ 3431282 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0021532 | neural tube patterning | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0021915 | neural tube development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004577534.1 | lncRNA | downstream | 51354 | 3360671 ~ 3363611 (-) | True | LOC113534314 |
| TU474141 | lncRNA | downstream | 51369 | 3360674 ~ 3363596 (-) | False | LOC113534314 |
| TU474142 | lncRNA | downstream | 51369 | 3360674 ~ 3363596 (-) | False | LOC113534314 |
| TU473957 | lncRNA | downstream | 119692 | 3286582 ~ 3295273 (-) | False | G399489 |
| TU473948 | lncRNA | downstream | 123337 | 3286055 ~ 3291628 (-) | False | G399489 |
| XR_004577577.1 | lncRNA | upstream | 83530 | 3514812 ~ 3516233 (-) | True | LOC117596450 |
| TU474294 | lncRNA | upstream | 129866 | 3561148 ~ 3562361 (-) | True | G399727 |
| TU474308 | lncRNA | upstream | 153619 | 3584901 ~ 3585214 (-) | True | G399738 |
| TU474312 | lncRNA | upstream | 169764 | 3601046 ~ 3635560 (-) | True | G399742 |
| TU474360 | lncRNA | upstream | 297657 | 3728939 ~ 3729385 (-) | True | G399783 |
| XM_026927230.2 | mRNA | downstream | 11435 | 3382114 ~ 3403530 (-) | True | evplb |
| XM_026927232.2 | mRNA | downstream | 20275 | 3382114 ~ 3394690 (-) | False | evplb |
| XM_034301771.1 | mRNA | downstream | 105568 | 3295919 ~ 3309397 (-) | False | gga3b |
| XM_034301770.1 | mRNA | downstream | 105568 | 3295919 ~ 3309397 (-) | True | gga3b |
| XM_034301772.1 | mRNA | downstream | 107792 | 3295919 ~ 3307173 (-) | False | gga3b |
| XM_034301543.1 | mRNA | upstream | 2446 | 3433728 ~ 3464801 (-) | False | mast1b |
| XM_034301542.1 | mRNA | upstream | 2446 | 3433728 ~ 3464801 (-) | True | mast1b |
| XM_026927743.2 | mRNA | upstream | 56991 | 3488273 ~ 3490167 (-) | True | junbb |
| XM_034301666.1 | mRNA | upstream | 153992 | 3585274 ~ 3600490 (-) | False | ubn2b |
| XM_034301665.1 | mRNA | upstream | 153992 | 3585274 ~ 3600488 (-) | True | ubn2b |
| XR_003403536.1 | other | downstream | 53139 | 3361748 ~ 3361826 (-) | True | LOC113534843 |
| XR_003403535.2 | other | downstream | 54011 | 3360882 ~ 3360954 (-) | True | LOC113534841 |
| trnae-cuc_42 | other | downstream | 103533 | 3311361 ~ 3311432 (-) | True | trnae-cuc_42 |
| TU473964 | other | downstream | 139010 | 3203290 ~ 3275955 (-) | False | G399489 |
| XR_003403516.2 | other | upstream | 692967 | 4124249 ~ 4132922 (-) | False | LOC113534693 |
| XR_004577542.1 | other | upstream | 1529820 | 4961102 ~ 5008461 (-) | False | sept7a |
| TU475643 | other | upstream | 2156116 | 5587398 ~ 5589747 (-) | True | G400815 |
| TU476079 | other | upstream | 2741706 | 6172988 ~ 6175260 (-) | True | G401205 |
| TU476305 | other | upstream | 2940368 | 6371650 ~ 6374490 (-) | False | polr1h |
