RNA id: TU474541


Basic Information

Item Value
RNA id TU474541
length 1878
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G399929
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 3885811 ~ 3887708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTGACAGCCCTTCTGAACCTCCTATGCCTGCTAGTTTAGGTTACGCGTGCTAGGCTAGCTTTGCCTCACAAGGCTgctcagatgaaaaaaaaaacccacagtttTGATAAAAGCTGTGAGAAGAACACCACCAGCCATTGGTGAGGATTACAATTGGTGAGGATGAAGCTCCACCCAggattagccccgcccacttcacaTTATCAGGGCCTCTATGTGGACTCAGGAACATCAGTAATGATTTAGATTGATTAGAAAGCAAttctgggaggaaaaaaagtaaagcaGTGAAAGGATACAGGTCTCGATGTTGGCACCGACGATGTAACCGTTAACGTCAAAGTTGATTCTGATGAATTTACCCTGTCGGACAAGAAACACACTTCTTCAGATAAAAGAACATACTAAAACACACAGCCATGTTTAACACGTCACAGTGAGGCTCTTACGAATCTCGACGAGTTGTCGTTCTTGACCGTTTTGGCATTTCCGAAGGCCTCGAGGATGGGGTTAGCCTGCAGTAGCTGCTTCTCCAGCTCCCCCTAGAGgtcacacacagacgcacacacacacacacgaacacagccaatacacacacactctcagcaaGGTGATAATATAAAGCACTGATACACCCACATCCCAAACCTGACAGAGAGCAAAGTGGTGGAGGAATCTGCAGGACTCACCGTGGCATCGACTGGCTACAATTAGCATAGGAAAAGCGCAAAtatacacactgcagcacactcactcgcacaaacacacacataaagcagATCCCAGTGAAGTGTTAACCCAAACACAAGAAACCCATCACCTCAGAGAAACCCATGACCTCATGCACAGCTGGAACACCTAACCAACCCGACATTACAGTACATTCAGGTCAACCCAGGTCCTCCCAGCaagctcaaatctgattagagTCTCCAAAAAAGAATCACGAAAAcattattatacaatatattctTAAACGCATTCTTTTATAGACGCCTGGCAAAACATGAGAACTGCAACAAACTCATGTTTGTCATTTACACGGGATTAAGTAATCTGATCATGTGAAAACTCCAGGTTTACAGGAATCAGACAATAATTAGATTTACATTCTAACTACATGACGCACCTCGAGTGTCTCTGTTCTATTAAGAACATGAAGAATATCAAGTGTGGAATCAGTCTTAATGTGTTCTCTATTCGATTACGTTAGTGCGCATGCAGATGTAGACAAATTACCGATATCAGATTAATGGTATACATGCATCAAATAATCTGATTATATACCTACTGAGATAAAACCCAGGTGTCTTTCTTGGCTGTCTTGGCTATGACATATGATAAGGGCTGTAATCTGATATAAAACGCCACTGCATCTACTTGCATAATCGGGTAACTTCtgaaagcatgtgtgtgaaCAGCGCCCGTTGTTACGGTAACACGAACAGCCCAAACCTGCTACCTACTCCTAAATATATAATGACTGGAGCACCAACAACAACCGCTAAACCAGGTAAAACTTCTCACTGCTTCCTCCTGTATCTATGAAGATAATCAGCTGTATGATATGGAGCCATACAATATTGTTAGTATGGATACTTAAAAATAACGCAAGGATCCTAGCGTTCCTTTAAAGATTAGACTgcctaacttttttttttttttttttttgcgaatTTGTGAGGATAACGTGTGTAACATCTGCGTCACATAAttctattcttcttcttttaaataaattaaaataaaatatattgcaattaaattaaaaattataaaaaagaaTCTTGTAGTTTAAGtttactttaataaacaaaataaataaaataatttgcaaTTATATAAagataatgacaaaaaaaaaatcaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474500 lncRNA downstream 30181 3815612 ~ 3855630 (-) True G399900
TU474509 lncRNA downstream 44897 3840603 ~ 3840914 (-) True G399909
TU474391 lncRNA downstream 103380 3782157 ~ 3782431 (-) True G399811
TU474386 lncRNA downstream 110111 3775305 ~ 3775700 (-) True G399806
TU474384 lncRNA downstream 112183 3773333 ~ 3773628 (-) True G399804
TU474514 lncRNA upstream 7017 3894725 ~ 3907811 (-) False G399910
TU474518 lncRNA upstream 13071 3900779 ~ 3951397 (-) False G399910
TU474511 lncRNA upstream 13488 3901196 ~ 3907811 (-) False G399910
TU474550 lncRNA upstream 22932 3910640 ~ 3911347 (-) True G399935
TU474524 lncRNA upstream 28760 3916468 ~ 3918115 (-) True G399913
XM_026927753.2 mRNA downstream 60307 3822746 ~ 3825504 (-) True LOC113534792
XM_026927404.2 mRNA downstream 76462 3794859 ~ 3809349 (-) False si:ch211-106h11.3
XM_026927403.2 mRNA downstream 76462 3794859 ~ 3809349 (-) True si:ch211-106h11.3
XM_026927512.2 mRNA downstream 131691 3747482 ~ 3754120 (-) True LOC113534607
XM_034301667.1 mRNA downstream 285325 3585274 ~ 3600486 (-) False ubn2b
XM_034301526.1 mRNA upstream 39545 3927253 ~ 3937638 (-) True rangap1a
XM_026927370.2 mRNA upstream 105517 3993225 ~ 3999563 (-) True LOC113534507
XM_026927361.2 mRNA upstream 155337 4043045 ~ 4059491 (-) False LOC113534503
XM_026927360.2 mRNA upstream 155337 4043045 ~ 4059478 (-) True LOC113534503
XM_034301488.1 mRNA upstream 219168 4106876 ~ 4117916 (-) False LOC113534511
XR_003403536.1 other downstream 523985 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 524857 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 574379 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473965 other downstream 609856 3264713 ~ 3275955 (-) False G399489
XR_003403516.2 other upstream 236541 4124249 ~ 4132922 (-) False LOC113534693
XR_004577542.1 other upstream 1073394 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1699690 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 2285280 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2483942 6371650 ~ 6374490 (-) False polr1h

Expression Profile