RNA id: XM_026942401.2


Basic Information

Item Value
RNA id XM_026942401.2
length 7490
RNA type mRNA
GC content 0.43
exon number 13
gene id maptb
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4295216 ~ 4338427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGAGGAAGTGCATTGTAGTTGATTACCGCTGATCAATGCACACTGCTGCAGTTGGACAGACAATAACTGTGTGTGTCAAGCAGACTGAATCCACCTCGAAATGGAGCACCAGGACATGATGAATTCCGGACAATACGGCTCTGGGGAGGACGTGGAGTCCGCCATGGCTGACGTTACCCTCGACGACGGCCCTCAGGAGGACATGAAGAACGGGACGGCGGGACACACGAGGCCTGGGGACGGCCCGGGAAAAGATGGCCTTTCTCCCAAAGAGGAGACAGAGGGGTCAAAGCCGGAATCGCCCTCTCGGGACGATGTAACAGAGGGTACAGAGCCTAAAGCTGCCTCCGGTCGTGAGGATGTGGTGTCTGCTGCACCAGGGACAGCAGGAGCAGGTGAAGATGCTTTAACACCAGAGGGGCTCTCTCCACCACACAGTGGTAGAAGCAGCGCGGCGTCTATGGACAGGGAAGAGGAGCGTTTGAACGGGGACATGGATGGGTCTGTTAGCCCACAGCAGTCACCCATGTCTCCACAAGCATCACAAGCTGCCCCAGCTGACGGTTTAGGGTCGGCAGTGCTGAGCTTTGACAGCCAGGTGAAGACGAGTCCTTCAGAGGAGCTGGTTGGGAAACACATTCCCAGTGGTTTTCaagatgagagagaggaagagagagaggaagaggaagttgAGAAGCATGGTAAAGAGGACGAGAGCAAAGATTTCACATCTGATCAGGAGAAAGAGTTGGTGGAGAGTCCTGTCATGCCCGATAGTCGTTCTATCATAGAGGATCAACAGGAGGAGCAAGAAAGAGATgtagaggaggaagaagaagaacaagatgAAACAGAAGTAGTTCTTCCAGTCCACAGCACTGTTGTCCCAGATGTGTCACCACAGAAACAAGAAAGCTTTGACATTAAGCCCTTCGACATGCTATCCCAACCCCAAATGACTCCAGATGAAGCAAAGAAACGAGGCCTGTCATTTGACTACACTGAATCCGAGATTGTTCATCAGGGAACCCCTGACCGCTGGGAAAATGGCTCTGATAAGACTCCCCCAGAGAGCAAAAGTCCTGATTCCTGCAGGGCTGACCCTGGTTCCCCTTTGTCCCCTAGTACTGCTCCTGATCACACCCAGGAGTCACCCATCACTGACCACCAGAGCGAAGCCCAAGAGTATGAACCAGTGCaagaacaggaagtggaagTGATCAGTATTCCTACAGCTCAGCAGGAGGTCATAGTACCCACGATGGAGCCAGAAGTAGACACCAAACCTGAGGATTCCAAAGACGACAAACCAGAGAAGTACCTGGAGACAACTGACGAAGATCTCATTGCTACTGTTGAAGCAGCACAAAGCGCTGAGCCTGTTGCCCAACCGGAAGAAGCAGCAGCCGCTGTTGCTGATGTTGAATTTGATGCTGGTGAACCCTGTCCTCCAGAACCAATTAAAGCAGCACCAACAAAAACAGCACCTGTTAAAGATGCTGCcattaaaaaagcaaagaagccCATTGCTGCAGTCGATGCAACCCCTGCCCCCAAATCCACCACAAAACTCGAGAAAGTTCCCTCAAAAGACGCCGCGCCAGTGCGAAAAACAAGCGCCCCGTCCAAAGCCAAGCctggagcagcagcagctgatAAAAAGACCCCTTCCACATCCACACCAGGCAAAGCTAGACTCAACTCCACCACTAAACGAGCCTCATCAATCCCAGTGCCCCCATCCAAACATATCTCCACCTCCGCTTCTCCCTCTGCCCCTGTTTGTGCCTCAGCCAGAGCCGCTTCTCTAAAATCTAAACCACACACTGCAGGAGCCAAGGAGTCCAGAGCCACAGCCGGTGATGCTAAGACGAAGACTAAACCTCAGGGAATTGGCACCAAAATCCCTGCAGCCGAATCTCCTAAGACTCCTGATCGTAGCGGCTGCAGCAGCCCTGCCACCCCGAAATCTCCGGCCAGTCGCAGCAGCACACCTGGGCAGCAGGTGAAGAAGGTGGCAGTGGTGCGCACTCCACCCAAATCTCCCGGGTCTCTCAGATCTCGCGCACCCATTGCCCCTGTTGCGCCCTTGCCTGACCTGAAAAACGTCAAATCCAAGATCGGTTCAACTGagaacatcaaacatcagcctGGGGGCGGAAAGGTGCAAATCCCCAGCAAGAAGATGGATCTGACCAGTGTGCAGGCAAGGTGTGACTCCAAAGCCAACATCAAGTACTCTCCAGGAGGTGGCAATGTTCAAATTGTGAACAAAAAGATGGATCTGAGCAACGTGCAGTCAAAGTGCGGCTCGAAGGCCAACATCCACCATAAACCAGGTGGCGGAAACGTGGAGATCAAATCAGAGAAGCTGGAGTTTAAAGCTCAGTCGAAAGTGGGATCTCTGGACAACATCGGCCACGTGGCCGGAGGTGGGAACAAGAAGATTGAGTCTCATAAGCTGATGTTCCGTGAGCAGGCGAAGGCTCGCACTGACCACGGCGCAGACATCGTGGTTAAATCCCCCTCCGTGTCAGCAGAGGGTTCACCCCGCCCCCTCAGCAAAGTTTCCTCCTCTGGCAGCATCAACATGAGTGAATCGCCGCAGCTGTCCACGCTCGCAGACCAGGTGACCGCTTCACTCGCTAAACAGGGCCTGTGATTCGACCTCCCGCTGCGCCTCGACCACCTCCACACCGAGACAAACGCAAGGCTGTAACatggcaatttaaaaaaaaaaaaaggtttaaaaaaaattataaaaaacaagcatttcacctcagtctgttaaaaaaaaaaaaaaaaggtgcttgCTGGATTTCTCCATGAATTTTGGTTCTTGACTGCAAGGGACTGataattaataatgttattgtcctgttctgtCTGATTAATTGAACTCATACGGTGCTGTATTGATCTGTTTGGTCAGTCACAGCATATAGAAGCCCATCTACAATGCTAAAACATCCTCTTTATACCGTACGCCGACTTTGccatctccctccctctctctctctctctctctctctctctctctctctttctctctctctccctctctctctttctctctctctcctctctctctctctctctcttctctgtgctTAGTTGCCTTATTGTGAAAGCTTCCCTCTCATCAccctttattaatttatttcaccTTCACTAGTAGGGAtttgtaatttttgttgttttttttttaaatatattaatagatACTACCTGAAATTGGACTGTGAGGGAGAAAACAAGCCAAAACGAGCTACCAGGAAGCACTGAGACGGTATTTAATGCCGACTTTGAGAATGACTAAGCAGTTTGTTGGCATCCTGACAATTATCCACATGTTCGCTGCAGAATTCATGCACATTATCATGCTgtcaaactataaaatatacaacccaggctaaacacacacacacacacacacacacacacacagttgtgttTTATATAGCAGAAACTTTGCAATCAAACGGGAGCATTGTTAGCGTTAACATTAGTTACAGTAATATACTAATCTCCTAATGCATAAACTAGTGAACATGTGAAATTTGCATTCATGCACAACAGAtgctgtaattattattactagggCCGCGCGAtagagattaaaaacatgtcGCAGTTACATTACGATACAACCTTGCAATATATTAAACAAACTGATAAACCGGTGGCTCGTCACCATTAAACATCagtctggttttattttttggagTAACACAACAACAGAAAACTTGTGTGGAGGTCAAAGTGCTCACagatcacaaataaataaataaataaataaaaaattttaaaagttgtGGATCTTTTCCATGTTGCAGGCGCAAAAGCTGATATCGTTATcgcagacctgccaacctttatgcattttgcgtAAGAACTCCGTATTTAAACTTTCActcaaataaaatacacaaaaaactcttctttttttctccaaacggCAGAGAAAATCGACATgcgaatctggaatgattgacagttgtgtaaGTGTTTTGAAATCGCTGATAGCCCCGCCCCCGCCCCCATATCACGCTAGTAGTGTTTCGACTCGATTCAGTTTTCCCACTTGAAAGACATGCTTTGAGTTCATTaacgtgaaataaaatctatcagtgtatgttcGACGTcagtttactatatttattacactgcaaaaaagcTTAGCATGTGaacatatcttgaatatagacaAATGTATGCAATATTTCCtattatgagattattgtaAATCAAATAAGATTATTCAGCCGGTTTTTAGATGATTTCACACATTTCCcgttttaaattataaataaagttagaACAATTATTTGCCAATAGAACAAGCTTGAAATGTCTAGAAACAGgtataataattgtattttttgatttattgtgACCTTAAAATAGTTAAATTCAACTATATTTGagacattttcacttgctaacatgatatttttgccatgaTTAGGTGCATTGAACAGCTTCCActgaaaatggttaaaaatgaaaaggaagagaaaaaaaaaacagatgaaaattttgactgggaaaaaaagtgaacagGAAAGTGTCaattattttaatggaaaatgtcGTCCCAGTTTCTACAAGGGACGTTAAGACAAGTGATTTGTAAAATGGAGGACGACACATGATTCTTCTTcagggttggcaggtctgacGGTGATTAAAGAGCATACAGTGCAGCCTTGCGTCTTAGTCTACAGAATATTCTAACAGATAAATGTTTCATGCGATCTCTGTACAGTTTACAACCTTATTAGAgttcagtacaaaaaaattcACTAATTTTCTGAGTGTGAATAGTTACCTGTGAAATTTGCCTGTCTTCAGCCTCAAATGTGCATTCGTGCATtttgctgtactgtaatgtaaaaacttattacacacacacacacacacacacacacagctttatacTTCATGTTCAGTGTACAGTTCAGTCAATCAGTAATCAATTAAGATTAATTACAGACAGATAAGTACTCATTTTCCTCCTTTTAGCGTACATACTGAGTAACTCCACATCCTGAACATTAGTGATCACTCGTGCTGATGATGAGCTGctctaataaacacattattccATGCGATTGAATATGATAAATAACACCTGAGTAGATCACACCTCGAGTGATAAAATATGCACATCTGTTCTAAAGTTTAAGATCAAACCTTAGAGAAAATATTGACCGAAAATGAAACGTAAACAAAggtttcctcttctctctttcttcctttttttgctgtctgaagtttgctaatgtagctaacaagcttGTAAATCTAAATCAGAACCATCACACACCACTCAGTCGTCTTTGTGGAGTTTTTTAGTATCTCATACCTACAACTCATGTATGTGGGTTTTTCCTCCCTCTGTTTTCACCTGCCAGTTCCcatccaccagccagctctcccctatcacatgacagctactaATCAGGAGGGTGAAGgatatcacatgcttcctccaagagaCATGAAGTTAGCTAAAAGCAtctttcttttcaaactgctgctcatgctgtgtcacagggcagcgtaacacactcagagtaaagcgctgtctgccctcttccgcatacctGAGCTCACACATGCCTATAATTGGTtactgtcactgtgattgacagaaaaGAGATGATGCTCCTACCATCCAAAGAGCATgatagtattaatattattaatacatgGCTAATAATATTAAGTCACACactgttctttatttaaaaaaattcaatgctTCATCTCAGTGTCAGACTTGggtaggaggtgtggcttttAGCTATTCTGCTAAACGTGTTCTGTTATTATAATCTGTACAAATAATATTACTGAGCCAAATGATATGGGGATTATTTAGACAAACTGACAGCTCGAAGTTTCCCTTTGTAGCTCCAGTAGTTATCTTCAGACAACAAACATGTCCTTactgatcaactacatttgaAACGAAGAGGAAACCTTGTGTACATGTCATATTTTGTCTGAATTCTATTTTATCTGTtacgaagcagctttacagaaatccagaggtgacagtgaccAGGAAAAAAAGTACTGAGACGACATGAAGAAACCTGcacaccggatagtgtgattattaaatcattacagtgtacaggtgtagaagagtaaagactaaCAGTACCAcgtgtgtttacaggatgttcagtatgagcagattgtgaataaaaGTCCTGGGAGGAGCttcaggacagtctttatgataaCAGCAGCAGCTCGTAGATACAAATACTCCTTTAAagtcaaaaatcagaaaatgatCACTTTATATTGGTGGTGGATGTTATGCTGTTTAACTCCTTTCCTCTTTaaacttaaatatttataaaaatgcatcGCGCTGCCTCATGAACCGTCTTTGCATGTAGTTCGGCTCCAACaagtgtgtgaatataaaaCTGGTCCAGTTTCACCATATCCGAAAACGCGCTAGAGTAATATTACAAGTCTTAATAAATAGAGGTAGTGATGTGTGATACACGGCGTAAATGTGAGTGAcagttcagtttaaaaaaaaaagtgcctccCTTTTCCTCGCTCACTAAAACTCtgataaatgtaaatagtgaaTGCTGAGGATTTGATTTGggaaaagaaaatgcaacagAAAACATGCAGAGCTGCTATAAACCTGTTCTAAAAGATGCCTTGATTAAAGACAAATCTGGTGTAATGGTCAACATTTATCTGCTTCAACAAATCACCTACTGCTTAACTTCACACACAGAGATGAACTCCTCTTACGCACTAAACCAACCtgagaatgaaagaataaaaacaaaatgatgcaaaaatcCAAACTAAGCATTTGTTAATAGTGTTCTTGTAGATGTGAGACGTGTTAGAAAAGAATGCattgttcttgtttttatttcctgatatttattaCCTTTTTTATATCTTCAATGCACCTCAGCTTTATTCCcttttgatattaaaaaaaaagaaaaaataacaaggATGTGAATGAGTATCAACGTTACCGCGAGCCGCTTCTTTCCCTCTGATGATTCACACGTTTAAAGTGACCATGGAGGCAAAACTGGAGGTGACATTTCAGGCAAAAATGAAACGCACTCCAGTCAGCCAAGACGTGTTTGGTGTGTTAAGTTTGCTTCGTGATTTGAGATTGAGGTCTTAAAGGTGAGTGATAAACCGGTGGCTTCTAGTCTTCTATTATTTGTTAGCTATGTTATCCTTGTAGCGCTAGTAAAAAATTAAGAAGCAAACCTGAGACACTGAACATGATTTAAGGTCTCAGCGTACTTAATGTGGAAACCTCAGCAGTTTCATTTTGGTCATCGCGTACGAGTGCGCCAATCCTGCAGACGGCGCTGTTAAAATTTGACAATTTCCACGACTACAGGAAGATGATTGCCACAAAGTCATCCATCTTGGAATGAATTGGTTCGGTCTGGGTACTTGCCATGTGCACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474784 lncRNA downstream 2689 4234403 ~ 4293157 (-) False G400112
TU474783 lncRNA downstream 2689 4290595 ~ 4293157 (-) True G400112
TU474821 lncRNA downstream 11453 4284049 ~ 4284393 (-) True G400133
TU474819 lncRNA downstream 14413 4280777 ~ 4281433 (-) True G400131
TU474749 lncRNA downstream 19364 4190741 ~ 4276482 (-) True G400085
TU475162 lncRNA upstream 195414 4533841 ~ 4534131 (-) True G400428
TU475167 lncRNA upstream 220061 4558488 ~ 4562020 (-) True G400431
TU475168 lncRNA upstream 223784 4562211 ~ 4563364 (-) True G400432
TU475178 lncRNA upstream 259373 4597800 ~ 4635057 (-) False polr3gla
TU475179 lncRNA upstream 259373 4597800 ~ 4631283 (-) False polr3gla
XM_026927485.2 mRNA downstream 108122 4179111 ~ 4187724 (-) True LOC113534587
XM_034301461.1 mRNA downstream 120692 4170470 ~ 4175154 (-) True LOC117596407
XM_034301411.1 mRNA downstream 127286 4166324 ~ 4168560 (-) True LOC117596393
XM_034301460.1 mRNA downstream 136096 4150899 ~ 4159750 (-) True LOC113534684
XM_034301699.1 mRNA downstream 151302 4134338 ~ 4144544 (-) True LOC113534634
XM_026942414.2 mRNA upstream 1108 4339535 ~ 4345214 (-) False myl4
XM_034301674.1 mRNA upstream 1108 4339535 ~ 4345214 (-) True myl4
XM_034301675.1 mRNA upstream 1720 4340147 ~ 4345214 (-) False myl4
XM_026942412.2 mRNA upstream 73272 4411699 ~ 4416837 (-) True LOC113543884
XM_026942399.2 mRNA upstream 80151 4418578 ~ 4456600 (-) False zfpm2b
XR_003403516.2 other downstream 162924 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 934020 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 934892 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 984414 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1019891 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 622675 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 1248971 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1834561 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 2033223 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 2097560 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile