RNA id: TU475232


Basic Information

Item Value
RNA id TU475232
length 1446
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G400477
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 4779611 ~ 4785657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCACAATATTGAAGACAGAAACAAGAAGATAATGATGGTTTCACTTTAATTATAACAGATGTTTCAGGATGCAATTTGAGAATATGAGAGGAGaatttcaaaatataaatacGAGAACGTCAGGACAACACGTCTGAGATTTTTAGGGCACTGATATACACTAGTGGTCAAAAGTATGGACTGGAATGAGTAAATATCTTGTATGgctttaaagacattttgataaagATGGGTAGAATGTGTTGTGAAGTCAATGCCCTAGGATCAATTTATTTCTGAagcaaaatgttttcatgtaaaAGAGAAAATTGTTTCCCCAAACAACACGTTCTTGTTTCCTGGTTATTTGGGAACTTGAAGAAAAGTCTCTTGGCTGAAGCTCCCTCATGATgcctttaaaatataaaatattttgaatttataaCACTTTTCTTGTTTGCTTCATAATTCcatatgtgttatttcatagtgttaatgtattcattattattctaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaaacccTTCTATGagcaggggtgcacaaacttttgactggtagtgtatTGTAAAAACAGGAAGGTGAGAAGACTTAACAGTgccattacacaaacacacttaacACGACACGATACATTACTAGTGTTACATGTAGAAAAGCATTCAGTATTAATGTACTGATTTCAGttacaaatattttagaaaacaatagacagttttttttatttatttattttttacaaaactCCAGTTTAtgatgatttaaaatgattgtACAGTTTTACATTTGTGGTCCCTTTAGACGGAATCTACTTTTGGTAACAGTTGGATGAAATGATTTGAAATTATGTTGCACAGGATCAACAAAAATCATCAGGCAGACTTTTTCACTGGAATAACGCATGATTAGtgttgagagagaaaaagcgaCTGCTTAAATGAAGAGcaattaagagagagagagagagagagagagagagagtatgtttTGATGGctagaaaatgtgaaaatcatccctccatcttgaGCTAACTGAAGAGCGGCGCTCACAGTAGAAGGCAGGTGCATTTGGACACTTTCTCGTGGCTGAGCAGGCCGAATTGGGACGTAGCCAAGCTTTGGATCAGGGTCCAGAAGTGTTTGAAGGTTATTCCCTCTCCATCCTTCACCCCCATCTGCTTCAGCACCTCCCCGAACCCTGCGTCCGACCCTCCAGTCTGACGAGGTTGGGCAGCTGCGAGGAAAGGAGGCTCTTGAATTCATCTGCCTTGAGCGTGGAGCCTTTATCAGCCGAAGCAGAGTGGAAGTTTGTGACCAGAGTGTTGATGGCCTTCTCAAGGTCTGAAaacCTGTTCCGCCATTTCAGCCGctcctttctccttctcttcagCAATTTGGTGCTCGACCTTCCTCCGTTGCTGTCACATCTTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475178 lncRNA downstream 144554 4597800 ~ 4635057 (-) False polr3gla
TU475179 lncRNA downstream 148328 4597800 ~ 4631283 (-) False polr3gla
TU475168 lncRNA downstream 216247 4562211 ~ 4563364 (-) True G400432
TU475167 lncRNA downstream 217591 4558488 ~ 4562020 (-) True G400431
TU475162 lncRNA downstream 245480 4533841 ~ 4534131 (-) True G400428
XR_004577584.1 lncRNA upstream 27004 4812661 ~ 4817295 (-) True LOC113543895
XR_003404450.2 lncRNA upstream 27787 4813444 ~ 4817295 (-) False LOC113543895
TU475255 lncRNA upstream 48097 4833754 ~ 4833983 (-) True G400494
TU475268 lncRNA upstream 96049 4881706 ~ 4884003 (-) True G400503
TU475264 lncRNA upstream 125693 4911350 ~ 4918883 (-) False G400500
XM_034301661.1 mRNA downstream 31773 4709738 ~ 4747838 (-) False sema4ab
XM_034301662.1 mRNA downstream 31773 4709738 ~ 4747838 (-) True sema4ab
XM_034301664.1 mRNA downstream 33958 4709738 ~ 4745653 (-) False sema4ab
XM_026942153.2 mRNA downstream 73178 4694466 ~ 4706433 (-) False si:dkey-81h8.1
XM_026942152.2 mRNA downstream 73178 4694466 ~ 4706433 (-) False si:dkey-81h8.1
XM_026942294.2 mRNA upstream 51193 4836850 ~ 4839788 (-) True pex11b
XM_026942249.2 mRNA upstream 55246 4840903 ~ 4850568 (-) True rit1
XM_026942104.2 mRNA upstream 71563 4857220 ~ 4877644 (-) True syt11a
XM_034301766.1 mRNA upstream 98941 4884598 ~ 4905395 (-) True si:dkey-222b8.1
XM_026942109.2 mRNA upstream 122869 4908526 ~ 4910977 (-) True snapin
XR_003403516.2 other downstream 646689 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1417785 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1418657 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1468179 3311361 ~ 3311432 (-) True trnae-cuc_42
TU473969 other downstream 1503656 3273840 ~ 3275955 (-) False G399489
XR_004577542.1 other upstream 175445 4961102 ~ 5008461 (-) False sept7a
TU475643 other upstream 801741 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1387331 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1585993 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1650330 6435987 ~ 6436048 (-) True LOC113543912

Expression Profile