RNA id: TU475266


Basic Information

Item Value
RNA id TU475266
length 4226
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G400501
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5030859 ~ 5035922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATACAAAACTTTACCCAGTTCATCCTGATTATtcagaaatatattatttaaaactaagTCGATTTTTTAGGAATACTTGTATTAAATTGTAGTCCAGGAGATTTAATTCTCAGTGACATCATATATTTCACTCGCCGGTAGCCCATCTGAGCTCCTaataacacactgcattaatGGTTGACCTCAAGAGGTTTAGAGATAGAATTTGGACTCAGTGTTAACTGTTGGTAactgataaaatataaacaggtTCCCGTAGTGGACGCAGAACTTTTAGTTTACctgtatttctgtttaattcGTTTTTAACTTACCCTCCCACTGATTTATCTCAGCTAtataaaaggaaaggaaaagcaCAAACCTGAGGAAGACTCCGAGCTGGCAGATGTGCACCGGAGCCAGTAAACCGTGTCTGCTGATGAATCTCTCTACTTTGGTCTCCAGGTTTTTGGAGGACTCAGAGTACCAGATCCAGCTGAAGATCTGCAGGAGAACCGAGGAACTGAGCAGAAGAAATATCAACAATCCCATGGAGAAGTATTTCTGCTCTTCATAGAGAGACACTATGGCCCACAGGTCCAGCACCACGTCCATGAGGAACAGCAGGAGAGATATCAGAGAAAAGAAGACATCTGAGAGCGCGAAATTAAAAGGAAAGCCTTCCTCCATGGcatgagcttggatgttttctGAGAAACTAAGCAGAGCTTTGGAGCATGAAATGAAAGCAAATCCTCTTTTGTACATGTGCGTCTGGGACACCTCCCTTTGTTGCGTCACACACCCATGTGTAAAGTTCTTGATGAGCGATTTACGAGAATGTGATGGTAGGTGgtaaaacagaaaatgagatTCTGAATAAAGGAAGTGATACAACcagaaaattacaaaaaaacgTACATGTGCATTTCATACACTTCACAACTAATCTTGGATTTAACAGCAGTACAGTTGGAAATATAAGATTTACATGTTATAAACATAATGTACAGTTTCCTGAAATCAAATCCAGTTTAGGAGTAGAAATTCACAGCCATGTTTCTTATCCTTTTGTGGATGCCAGTTACGATTTTTTCAGTCGGAGCTAAAACTGTGCCCTCAGGTTCAGGTTGAGCTGCAGGTTCAGGTCCTAGGGTACAACTCAGGGTCACCTCCAAAACATCATAACTTTCTTGATCCGATTTTGATTTCATCTGTGACTTCTCATCTTTCACATTCATCTCTAAAACTGTTTTACTGGGATGAAATTTCCAGTAATAAACCAGTTTCAGTGCAAGTCCTATAATGTAGATTATCATTAACATAACAATCAGTAGGTAGGGATTAATAGGTAGTGGACTAAGACGAGCTGATTCCACAGATCTCTTCCACCACCATAACCCTAACAGCAGCATCGTATCTGCCCCCATAACCATGTGATAGATGATTCCTCTGAGTTTAGTCTTTCCACTCGCTACACTAAACCAGGTGAAGTACCAGATGAGGCCTACGGTGGCCCGGTACAGCCATTCTCCAGCTTTAGTGTCCATGAAGTCTGTCTTCTGCCACCAGGCCCAGAGGACCAGCAGCGTCCACAGGAACAGAAAGTGAGCGGCGATGTAGCAGGGCAGGACAGAGGCAAagagggacacacacaccacacgtgGGCCAATCAGGAACAGGTTCCACAGGAAGTAGATTATAGAGGAAGACCATCTCATCTTAAGCTTCTCAGGGAGGAACGCACGCATGCTGCGATGGACTGCATCTCCTGCATCTCTATGATGAGAGCCATCATCAGGATGATCTGTGGAGCACTCTCAGAGAACGCCTCGAACAGACGCAACATGCTGAGGTCATGATTCATGTATACGGTGACCGGCTTCTGGAAACGGTTTTTGGAGGACTCAGAATACCAGATCCAGCTGAAGATCTGCAGGAGAACCGAGGAACTGAGCAGAAGAAATATCAACAATCCCATGGAGAAGTATTTCTCTTCTTCATAGAGGCATTGTATGGCCCACAGGTCCAGCACCACGTCCACGAGGTAAAAGATAAGAGTCAGCAGAGAAAAGAAGACGTCTGAGAACGTTAAGTTGAAAGGAAAGCCTTCCTCCATGGCATGAGCCTGGACGTTTTCTGTGTAACCTAGCACAGCTTTGGAGTacgaaatgaaaacaaatccactgtatgtaagggtgtgtgagaggtgcTTCCTTTTGTTGCGTCACGTAGCTGAATGTGATTTCTGTGCACAGTTTGTTGACAATGATTCATAGGAATGGAATGGGGGGGGAAAATGACAAGGTAAAAGAATtgacacacattaaacacacataacAACCAGAAAACTCTATATTGACATACATACTAACGAATGTACACATGCATTACatgcactttttaaataatcttgGACTGAACAGCAGTAAAACTGGAAAATCTCCGATCATAACCAGCCATGCCCATCTCCGATCATACCATCATAGGTCCCGCCCATGCCCAAGGGAGGTATGTGCATGCTGATGGACGAGATAGAGGGAACAGGACGGAGTAGCAACTTTTCTGAACACCACTGATTAACTTGtacaccacactgctgctgaattcaCAGTGCttttggctgtaattcaaatccaaggttaataataaatggattttaaagtgtgctattattttacaaagaaaaacatgtaattcttgtcctgtaaggagatgtttatttaacattaatggaagaaGTATCCAGTCtgctaatttacagagaaaaacatccaatctaattggaagGAACTTcattatgcagcaagacaatgacccaaaacacactgccgacacaacaaaggacttcaacAGGGGAAAGAAGTGGAAGAAAGTGGAAAAAGTGGCAAAGTTAATCGCCAGGCCTTAACCCAATTCAGCAGCATTTTACCTCCTGAAgaagagactgaagggagaaacctcccaaaacaaacaacaacagaaagaaGTACAAGCCTGGacaagcatcacaaaagaagaatgcgactacagtttggtgatgtcagtgcgttgccagcttgatgcagttattgcaagcgaGGGCTATGCGACCTAATATTAagagttatttactttaatttactttaagactatatgttcctatacttttgctcacttACAaactgcacgcaaagtacagtacattgtccttaaccattagagggcaaaagcttacctaacgatctctccctctctctccctctctctctctctctcctctctctctctctctctctctctctctccctctctccatctctctccatctctctctctccctcactctctgtcgagctacacatgctacttctgagatgccagtgatcctgacccttctgctcctcctcgctgcctgatccatcctgatgccctacttctggttggagttcttatCGGTTGAGttctgctgggggtggccccatatggacggcctgaagaaccatttggattgctggggatggcgccacctggggctgtggagatggcttggggatcacacatggggagctgtactgtaatggcttgggaccgcgattgctgtagtggctttggggctgcggttgccatgagcaccttcgtactcaggactccatcagtggacggtggatagattttaGCCAACCGGACTTATTGtgaatactgtgatgaatttattggttgcacaattgcactatttgtccatatagtacacaataatagaagggatttatttataattgcactatccgtgaattgaattgaacctaCAAATTGGGTGGTCTAACAgcaaaggtgccatgttgtttaacaaatccagatgtaaatatcaggaaatgaaagctgaaattctgatcgaTCGttgcatattcatcttttgatctcaaacccaaatgtcttcaatgtatagcaaaaacaaaagaattggccttgatGTTCCAATACCTTCAGTGGGGACTGTATATATGGTTTTTGAAAATGATTTTCcaaatttttaaagaaactgaGCAAAGCAAATATAGttacaaaaatcattttttattatcgTTCCACATTTTGACTgaacagagaaaaaataaataatcaaatcagcTGAGCTCTCGGTGTCTCTGTGGTCAGAGTTGACTGTCATGATCGAGCACATTTATGACATGAGACTCTTAAgatatcatgtgtgtgtgtgtgtgtgtgtgtgtggccctgCTGCAGATGTGTGATACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475282 lncRNA downstream 18064 5012187 ~ 5012795 (-) True G400517
TU475264 lncRNA downstream 111976 4911350 ~ 4918883 (-) False G400500
TU475265 lncRNA downstream 111976 4911350 ~ 4918883 (-) True G400500
TU475268 lncRNA downstream 146856 4881706 ~ 4884003 (-) True G400503
TU475255 lncRNA downstream 196876 4833754 ~ 4833983 (-) True G400494
TU475347 lncRNA upstream 92313 5128235 ~ 5136641 (-) False LOC113543870
XR_003404451.2 lncRNA upstream 204177 5240099 ~ 5242052 (-) True LOC113543905
TU475417 lncRNA upstream 242981 5278903 ~ 5279314 (-) True G400622
TU475475 lncRNA upstream 335150 5371072 ~ 5380937 (-) True G400676
TU475654 lncRNA upstream 547633 5583555 ~ 5587381 (-) True G400826
XM_034301534.1 mRNA downstream 22395 4961102 ~ 5008464 (-) True sept7a
XM_034301535.1 mRNA downstream 22398 4961102 ~ 5008461 (-) False sept7a
XM_034301533.1 mRNA downstream 22398 4961102 ~ 5008461 (-) False sept7a
XM_026942235.2 mRNA downstream 76613 4928478 ~ 4954246 (-) True eepd1
XM_026942109.2 mRNA downstream 119882 4908526 ~ 4910977 (-) True snapin
XM_034301437.1 mRNA upstream 4364 5040286 ~ 5052042 (-) False eya3
XM_026942137.2 mRNA upstream 4364 5040286 ~ 5052042 (-) False eya3
XM_034301438.1 mRNA upstream 4364 5040286 ~ 5052042 (-) False eya3
XM_026942136.2 mRNA upstream 4364 5040286 ~ 5052042 (-) True eya3
XM_034301804.1 mRNA upstream 17843 5053765 ~ 5059583 (-) True si:ch211-195b13.1
XR_004577542.1 other downstream 22398 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 897937 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1669033 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1669905 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1719427 3311361 ~ 3311432 (-) True trnae-cuc_42
TU475643 other upstream 551476 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1137066 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1335728 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1400065 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 2225418 7261340 ~ 7276644 (-) False fndc5b

Expression Profile