Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU475347 |
| length | 830 |
| lncRNA type | sense_over |
| GC content | 0.36 |
| exon number | 2 |
| gene id | LOC113543870 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 5128235 ~ 5140380 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU475266 | lncRNA | downstream | 92313 | 5030859 ~ 5035922 (-) | True | G400501 |
| TU475282 | lncRNA | downstream | 115440 | 5012187 ~ 5012795 (-) | True | G400517 |
| TU475264 | lncRNA | downstream | 209352 | 4911350 ~ 4918883 (-) | False | G400500 |
| TU475265 | lncRNA | downstream | 209352 | 4911350 ~ 4918883 (-) | True | G400500 |
| TU475268 | lncRNA | downstream | 244232 | 4881706 ~ 4884003 (-) | True | G400503 |
| XR_003404451.2 | lncRNA | upstream | 103458 | 5240099 ~ 5242052 (-) | True | LOC113543905 |
| TU475417 | lncRNA | upstream | 142262 | 5278903 ~ 5279314 (-) | True | G400622 |
| TU475475 | lncRNA | upstream | 234431 | 5371072 ~ 5380937 (-) | True | G400676 |
| TU475654 | lncRNA | upstream | 446914 | 5583555 ~ 5587381 (-) | True | G400826 |
| TU475747 | lncRNA | upstream | 674703 | 5811344 ~ 5812012 (-) | True | G400913 |
| XM_034301715.1 | mRNA | downstream | 798 | 5120270 ~ 5127437 (-) | True | LOC117596451 |
| XM_034301804.1 | mRNA | downstream | 68652 | 5053765 ~ 5059583 (-) | True | si:ch211-195b13.1 |
| XM_026942434.2 | mRNA | downstream | 70311 | 5053765 ~ 5057924 (-) | False | si:ch211-195b13.1 |
| XM_034301437.1 | mRNA | downstream | 76193 | 5040286 ~ 5052042 (-) | False | eya3 |
| XM_026942137.2 | mRNA | downstream | 76193 | 5040286 ~ 5052042 (-) | False | eya3 |
| XM_034301465.1 | mRNA | upstream | 14447 | 5151088 ~ 5152608 (-) | True | LOC117596409 |
| XM_026942148.2 | mRNA | upstream | 72512 | 5209153 ~ 5213318 (-) | True | si:dkeyp-92c9.2 |
| XM_034301733.1 | mRNA | upstream | 78359 | 5215000 ~ 5221257 (-) | False | LOC113543887 |
| XM_026942416.2 | mRNA | upstream | 78359 | 5215000 ~ 5221257 (-) | True | LOC113543887 |
| XM_034301466.1 | mRNA | upstream | 92626 | 5229267 ~ 5232051 (-) | True | LOC113543693 |
| XR_004577542.1 | other | downstream | 119774 | 4961102 ~ 5008461 (-) | False | sept7a |
| XR_003403516.2 | other | downstream | 995313 | 4124249 ~ 4132922 (-) | False | LOC113534693 |
| XR_003403536.1 | other | downstream | 1766409 | 3361748 ~ 3361826 (-) | True | LOC113534843 |
| XR_003403535.2 | other | downstream | 1767281 | 3360882 ~ 3360954 (-) | True | LOC113534841 |
| trnae-cuc_42 | other | downstream | 1816803 | 3311361 ~ 3311432 (-) | True | trnae-cuc_42 |
| TU475643 | other | upstream | 450757 | 5587398 ~ 5589747 (-) | True | G400815 |
| TU476079 | other | upstream | 1036347 | 6172988 ~ 6175260 (-) | True | G401205 |
| TU476305 | other | upstream | 1235009 | 6371650 ~ 6374490 (-) | False | polr1h |
| XR_003404453.2 | other | upstream | 1299346 | 6435987 ~ 6436048 (-) | True | LOC113543912 |
| TU476702 | other | upstream | 2124699 | 7261340 ~ 7276644 (-) | False | fndc5b |
