RNA id: XM_034301714.1


Basic Information

Item Value
RNA id XM_034301714.1
length 2437
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC113543870
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 5128235 ~ 5140380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAAAAACGCCTCACtttcactttcctttttttcagtcAGCTGGAAGCCAGTTTTATCGAcaaaaatacagtgaaatatatgttgaaatatgaaagaaaggaaaaccctttacattttagtctttttcttaCATCCTCTCCAGCTGTTTGGTGATGATGTCCATTCCATGAGTGGCTTTTTCATCGGTTCTCAAGGCCTCAGCCTGCCCAGTTACATAGAAAGAATTACTGTGAACGACATTACCGTCTTTTACCATGACAGCGGGAAAAACTCCATAGCGCCGTGTCCCAAATGGCTCAACACCACCGCCGGCCAGCAGCACTGGGAAGACATCAGAGTCATATCACACCACAACAGACAGACCATGACTACAGCTCTCGAATCAGCCATACAGCAGTTCAATCTCACAGGCTCACCTGCGGACATTAACGTATACCAAGGCTACAGTCGCTGTGACCTCTATCCAAATGGCACCATCAAGGCATTTTTAACTCATGCGTTCAATGGGAAGGACTTCTTAAGTTTAGATATTGACAGTAAGACGTACATCGCTTCTGTTCCTCAAGCCCTCAAATATAAAAGGCAGAGGGAGCGAAATCCAGAGTTGATTGGGATCACTGCATCTTTCTACCAAAAGACCTGTTTTGATCGCTTGAAGATGTTCTTACAGCATGCTCCTGAAGTCAACACGAAGAAGGCTCCAGAGGTCAGGCTTTTTGAGCGGCAGAGATCTGGTTCCACTCTCCTCACCTGTCATGTGACTGGGTTTTACCCCAGAGCGGTGCAGGTGAAGTGGATTGGAGCAGATTTACAGCTGGTGGATGATGAGATGAATGATGTGCTGCCTAATGGTGATGGCACGTATCAGACCAGAAGGAGTGTGATCAGACCTGAGGAGGCCACAGGAGATGAGCACTACAGCTGCGTAGTGCATCACAGCAGCCTAGAGAGAAATATTACAATTCCCTGGGATAAAGAAGAGAAACGCTTCAGGCTTCTTGTTTGGATTACACTAGGCTGCATATTCATGGCCACTGTACTTGGGATTGTAATCAGATGCATCTCTAAAAGTAAAGGCACCATTTCAGATATTAATGTATACCAAGGCTACAGTCGCTGTGACCTCTATCCAAACGGCACAGTCAAGGCATTTTTAACTCATGCATTCAATGGGAAGGACTTCTTAAGTTTAGATATTGACAGTAAGAGGTACATTGCTTCTGTTCCTCAAGTCTTCAAATATAAAATTAGTAGGGAGAGGAATATAATCTTGCTTGAAACCATGGTGTCTTTCTACAAAAAGACCTGTTTTGACCGCCTTAGGATGTTCTTAGAGCATGCTCCTGGTGTCAGAATGAAGAAAGCTCCAGAGGTCAGGCTTTTTGAGCAGCAGAGATCTGGTTCCACTCTCCTCACCTGTCATGTGACTGGGTTTTACCCCAGAGCGGTGCAGGTGAAGTGGATTGGGGCAGATTTACAGCTGGTGGATGATGAGATGAATGATGTGGTGCCTAATGGTGATGGCACGTATCAGACCAGAAGGAGTGTGATCAGACCTGAGGAGAAAACAGGAGATCAGCACTACAGCTGTGTAGTGCATCACAGCAGCGTAGAGGGAAATATTACAATCCCCTGGGATAAAGAAGAGAAACGCTTCAGGCTTCTTGTTTGGATTACACTAGGCTGCATATTCATGGCCACTGTACTTGGGATTGTAATCAGATGCATCTCTAAAAGTAAAGatgctgggatttgaactttcCTCTCATGTGAAGACCACTGAATGACAGAAGTTTCTCACTTTCAGTCATTCAGAGCATTCTTGTTTGACGTCCTACTTCTACCTCAGATACCTCAGACTCAAGCAGAGCCACACTGTTGCCTGTGTACTTTCTATGTACTCTGTACCTGTGTACAGTGTACTTTCTCACAGAATCAGTTGTTTAATCAGTTTCGGTCATAGGTGCCTCATGTTTACATGTTtgatttttcaccttttttgaCCTCAGAATACCTCACAGGACagagtatacagttatagacaGTGTTGCATATCATATTTCAAAATTGATAAAAGCTGCCAAACATGTAACTCACAATAACATCAGTTCTGAAGTTTGTATTACAGATTACGCACAACATAAATTGAATCGTGAATCGATactgcatttcatttcttttttgtcaCATTAATAACCATTTCAGTAAAGAATTTCTGATTATAAACAAGATCTGTGGTATTATatgtcatatttaattaatgatCCAATCTCTTTAGCTACATCCTCATTCTGTGATTCTCATTGTATGGATGATAGTTTAGGGACATTAAGAATGTGTTATTgttaattgtgttaatgtaatCTGTATTCCACTTGCTATCAATGTGTTTCTATTCTAGGTCTTCAACAAACTGAATAAAGCCCTacctcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU475266 lncRNA downstream 92344 5030859 ~ 5035922 (-) True G400501
TU475282 lncRNA downstream 115471 5012187 ~ 5012795 (-) True G400517
TU475264 lncRNA downstream 209383 4911350 ~ 4918883 (-) False G400500
TU475265 lncRNA downstream 209383 4911350 ~ 4918883 (-) True G400500
TU475268 lncRNA downstream 244263 4881706 ~ 4884003 (-) True G400503
XR_003404451.2 lncRNA upstream 99719 5240099 ~ 5242052 (-) True LOC113543905
TU475417 lncRNA upstream 138523 5278903 ~ 5279314 (-) True G400622
TU475475 lncRNA upstream 230692 5371072 ~ 5380937 (-) True G400676
TU475654 lncRNA upstream 443175 5583555 ~ 5587381 (-) True G400826
TU475747 lncRNA upstream 670964 5811344 ~ 5812012 (-) True G400913
XM_034301715.1 mRNA downstream 829 5120270 ~ 5127437 (-) True LOC117596451
XM_034301804.1 mRNA downstream 68683 5053765 ~ 5059583 (-) True si:ch211-195b13.1
XM_026942434.2 mRNA downstream 70342 5053765 ~ 5057924 (-) False si:ch211-195b13.1
XM_034301437.1 mRNA downstream 76224 5040286 ~ 5052042 (-) False eya3
XM_034301465.1 mRNA upstream 10708 5151088 ~ 5152608 (-) True LOC117596409
XM_026942148.2 mRNA upstream 68773 5209153 ~ 5213318 (-) True si:dkeyp-92c9.2
XM_034301733.1 mRNA upstream 74620 5215000 ~ 5221257 (-) False LOC113543887
XM_026942416.2 mRNA upstream 74620 5215000 ~ 5221257 (-) True LOC113543887
XM_034301466.1 mRNA upstream 88887 5229267 ~ 5232051 (-) True LOC113543693
XR_004577542.1 other downstream 119805 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 995344 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 1766440 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 1767312 3360882 ~ 3360954 (-) True LOC113534841
trnae-cuc_42 other downstream 1816834 3311361 ~ 3311432 (-) True trnae-cuc_42
TU475643 other upstream 447018 5587398 ~ 5589747 (-) True G400815
TU476079 other upstream 1032608 6172988 ~ 6175260 (-) True G401205
TU476305 other upstream 1231270 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 1295607 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 2120960 7261340 ~ 7276644 (-) False fndc5b

Expression Profile