RNA id: TU476110



Basic Information


Item Value
RNA id TU476110
length 954
lncRNA type read_through
GC content 0.44
exon number 2
gene id G401230
representative True

Chromosome Information


Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6096979 ~ 6187263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aaaaaattatttttcagttttcagTTATCACTCGAACATACACCAATGAAAATGGCTGAAAAGCCGATCACAGgcagtgcagcaggtagcattgcagccttgcagctccagggtcccaggttcgatcctgagctcgggttactgtctacatggagtttctgtgtgttttttctgtgtgggtttcttccaagttcttcagtttcttctcacctcccaaaaacatgcaggtaggtagattggctaagataaattgccctaggtgtgcatgcgtgcgtgtggttcagtgtgatggactggtgttcccTCCAGGGTTTATTCTCGCCTCTCGTCTTTATTCTcgagtgttcccaggataggctccacaTCTCCCacaaccatgaccaggataagcGGTTACTGAGTGTGAGATGAGCCAGTCGACGTGCGAATCCGGAAGGGTTGACAGTTACATAGGTGTTTTTGCACTCTCCTGTTATTAACACATACCAAGGGAAGCCCCACCCCCTTCTTTTCATGTAACATTAGTAATCTCTCGTCTGCTCTCGTCTGCTCACGTCTGCTCACGATTTTACGGCAGTGGGATCTGGGAATGAGAAACAAGCTAGCACAGAGGTGCATCACACcactaataaaatatgaaacaacTGAAAAATACATATCGAATGAAATATGTAGATTAGTAGTGAACATTTTTGATTAATGGATTGAGGAAGAACAAACACTGGTTACTGCTACACTAGTAGCGTACTGAAGCACTCTGCTGCtggccaataaaaaaaaataacactgataGATCAGACATATGATACACACACTTGTCCAGGTTGCCTCTGCTTGGTCTGGTGAACTCGATCATTTTAGTGCCTGTTTTACAAAGCGTCGAACCTGCAGTGCTAACATAGTCAAGATTTTAAATCTCCACCAAAAATTTTAAGTTACTGGTGTGTACTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU476060 lncRNA downstream 75214 6021554 ~ 6021765 (-) True G401196
TU475958 lncRNA downstream 125805 5907147 ~ 5971174 (-) True G401106
TU475747 lncRNA downstream 284967 5811344 ~ 5812012 (-) True G400913
TU475654 lncRNA downstream 509598 5583555 ~ 5587381 (-) True G400826
TU475475 lncRNA downstream 716042 5371072 ~ 5380937 (-) True G400676
TU476142 lncRNA upstream 710 6187973 ~ 6188409 (-) True G401243
TU476159 lncRNA upstream 60193 6247456 ~ 6250036 (-) True G401259
TU476302 lncRNA upstream 172491 6359754 ~ 6359977 (-) True G401388
TU476320 lncRNA upstream 218043 6405306 ~ 6405878 (-) True G401403
XR_003404449.2 lncRNA upstream 248268 6435531 ~ 6437074 (-) True LOC113543850
XM_026942101.2 mRNA downstream 14795 6075576 ~ 6082184 (-) False csnk2b
XM_034301528.1 mRNA downstream 14879 6075576 ~ 6082100 (-) True csnk2b
XM_026942333.2 mRNA downstream 250701 5813904 ~ 5846278 (-) True dtnbp1b
XM_026942332.2 mRNA downstream 261942 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942331.2 mRNA downstream 261942 5813904 ~ 5835037 (-) False dtnbp1b
XM_026942293.2 mRNA upstream 1829 6189092 ~ 6208987 (-) True sacm1la
XM_026942212.2 mRNA upstream 40590 6227853 ~ 6337451 (-) False gabbr1b
XM_026942211.2 mRNA upstream 40590 6227853 ~ 6337451 (-) True gabbr1b
XM_026942445.2 mRNA upstream 162622 6349885 ~ 6357426 (-) True sh3bp5lb
XM_026942116.2 mRNA upstream 173362 6360625 ~ 6370712 (-) True gtf2h4
TU475643 other downstream 507232 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1088518 4961102 ~ 5008461 (-) False sept7a
XR_003403516.2 other downstream 1964057 4124249 ~ 4132922 (-) False LOC113534693
XR_003403536.1 other downstream 2735153 3361748 ~ 3361826 (-) True LOC113534843
XR_003403535.2 other downstream 2736025 3360882 ~ 3360954 (-) True LOC113534841
TU476305 other upstream 184387 6371650 ~ 6374490 (-) False polr1h
XR_003404453.2 other upstream 248724 6435987 ~ 6436048 (-) True LOC113543912
TU476702 other upstream 1074077 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2961248 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 3040132 9227395 ~ 9251794 (-) False runx1t1

Expression Profile


TU476110 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU476110 Expression in each Bioproject

Bar chart with 3 bars.
TU476110 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.