Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU476306 |
| length | 385 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 6 |
| gene id | LOC113543850 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 6435531 ~ 6437074 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU476320 | lncRNA | downstream | 29662 | 6405306 ~ 6405878 (-) | True | G401403 |
| TU476302 | lncRNA | downstream | 75563 | 6359754 ~ 6359977 (-) | True | G401388 |
| TU476159 | lncRNA | downstream | 185504 | 6247456 ~ 6250036 (-) | True | G401259 |
| TU476142 | lncRNA | downstream | 247131 | 6187973 ~ 6188409 (-) | True | G401243 |
| TU476110 | lncRNA | downstream | 248277 | 6096979 ~ 6187263 (-) | True | G401230 |
| TU476428 | lncRNA | upstream | 129009 | 6566037 ~ 6567293 (-) | True | G401482 |
| XR_004577578.1 | lncRNA | upstream | 142000 | 6579028 ~ 6581192 (-) | True | LOC117596453 |
| TU476432 | lncRNA | upstream | 148825 | 6585853 ~ 6586574 (-) | True | G401486 |
| TU476437 | lncRNA | upstream | 157680 | 6594708 ~ 6594940 (-) | True | G401491 |
| TU476481 | lncRNA | upstream | 305029 | 6742057 ~ 6742274 (-) | True | G401526 |
| XM_026942425.2 | mRNA | downstream | 1701 | 6429098 ~ 6433839 (-) | True | c29h6orf47 |
| XM_026942448.2 | mRNA | downstream | 12714 | 6406106 ~ 6422826 (-) | False | vars2 |
| XM_026942447.2 | mRNA | downstream | 12714 | 6406106 ~ 6422826 (-) | True | vars2 |
| XM_026942252.2 | mRNA | downstream | 31612 | 6392969 ~ 6403928 (-) | False | mgat1b |
| XM_034301660.1 | mRNA | upstream | 16492 | 6453520 ~ 6461157 (-) | True | si:ch211-152p11.4 |
| XM_026942257.2 | mRNA | upstream | 33174 | 6470202 ~ 6529172 (-) | True | adcy2b |
| XM_034301571.1 | mRNA | upstream | 92152 | 6529180 ~ 6554991 (-) | True | tent4a |
| XM_034301572.1 | mRNA | upstream | 92153 | 6529181 ~ 6554991 (-) | False | tent4a |
| XM_034301573.1 | mRNA | upstream | 101588 | 6538616 ~ 6554991 (-) | False | tent4a |
| TU476305 | other | downstream | 61050 | 6371650 ~ 6374490 (-) | False | polr1h |
| TU476079 | other | downstream | 260280 | 6172988 ~ 6175260 (-) | True | G401205 |
| TU475643 | other | downstream | 845793 | 5587398 ~ 5589747 (-) | True | G400815 |
| XR_004577542.1 | other | downstream | 1427079 | 4961102 ~ 5008461 (-) | False | sept7a |
| XR_003403516.2 | other | downstream | 2302618 | 4124249 ~ 4132922 (-) | False | LOC113534693 |
| TU476702 | other | upstream | 824312 | 7261340 ~ 7276644 (-) | False | fndc5b |
| TU477767 | other | upstream | 2711483 | 9148511 ~ 9161470 (-) | False | G402673 |
| XR_004577570.1 | other | upstream | 2790367 | 9227395 ~ 9251794 (-) | False | runx1t1 |
| XR_003404456.1 | other | upstream | 2939898 | 9376926 ~ 9377039 (-) | True | LOC113543915 |
| TU477891 | other | upstream | 2949974 | 9387002 ~ 9416207 (-) | False | triqk |
