RNA id: TU476428


Basic Information

Item Value
RNA id TU476428
length 509
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G401482
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 6566037 ~ 6567293 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggctgaaatgcgtgcgtgtgtgtgtgtattatctcTCACCTGCAGGGGACATCGCACAGCACTCTGTCATAGAACAGGATGTCCTTCTTTCCGTTGCTCTCCACTTGCAGGCGAGGGATGCAGGAGGCATCGTGGTTCACCACCATGATACACGGACTGTTCAGCCTCTTAGCCTGGTGCACCAGCAGGTAACAGCGCTTATTATCCACATCGTTAGCGATTACAAAGCCCTCAGGAAAGGGCACATCCATATCAGAATGGAGCATCTCTATAAGCTGAGCAGTCTTTGATCCTGGGGCAGCACACATATCCAAAATCTTGTGATGAGGTTCGATTTTCAGCAGTAGAGGAGGAATCATACTGACCGCCTCCTGTCGGCTGATATTTCCGGATTCGGTCTCGTTCACTAAAAACTGATGGAACTTCTCCAGAAGTGGAGACTTGCGCAAGATCTTCCTGCTCATGTTGGTGTGCCAAGCCAGTTCATCAGGGTACCTGAGATCCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404449.2 lncRNA downstream 128963 6435531 ~ 6437074 (-) True LOC113543850
TU476306 lncRNA downstream 129009 6435540 ~ 6437028 (-) False LOC113543850
TU476320 lncRNA downstream 160159 6405306 ~ 6405878 (-) True G401403
TU476302 lncRNA downstream 206060 6359754 ~ 6359977 (-) True G401388
TU476159 lncRNA downstream 316001 6247456 ~ 6250036 (-) True G401259
XR_004577578.1 lncRNA upstream 11735 6579028 ~ 6581192 (-) True LOC117596453
TU476432 lncRNA upstream 18560 6585853 ~ 6586574 (-) True G401486
TU476437 lncRNA upstream 27415 6594708 ~ 6594940 (-) True G401491
TU476481 lncRNA upstream 174764 6742057 ~ 6742274 (-) True G401526
TU476488 lncRNA upstream 181700 6748993 ~ 6749232 (-) True G401531
XM_026942444.2 mRNA downstream 2405 6555953 ~ 6563632 (-) True srd5a1
XM_034301571.1 mRNA downstream 11046 6529180 ~ 6554991 (-) True tent4a
XM_034301572.1 mRNA downstream 11046 6529181 ~ 6554991 (-) False tent4a
XM_034301573.1 mRNA downstream 11046 6538616 ~ 6554991 (-) False tent4a
XM_034301568.1 mRNA downstream 11046 6538616 ~ 6554991 (-) False tent4a
XM_026942124.2 mRNA upstream 30993 6598286 ~ 6610939 (-) True ube2ql1
XM_026942343.2 mRNA upstream 112016 6679309 ~ 6683495 (-) True irx1b
XM_026942327.2 mRNA upstream 175429 6742722 ~ 6745462 (-) True ndufs6
XM_026942374.2 mRNA upstream 208686 6775979 ~ 6780923 (-) True nrsn1l
XM_026942102.2 mRNA upstream 411766 6979059 ~ 6980290 (-) True sox4a
XR_003404453.2 other downstream 129989 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 191547 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 390777 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 976290 5587398 ~ 5589747 (-) True G400815
XR_004577542.1 other downstream 1557576 4961102 ~ 5008461 (-) False sept7a
TU476702 other upstream 694047 7261340 ~ 7276644 (-) False fndc5b
TU477767 other upstream 2581218 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 2660102 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 2809633 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 2819709 9387002 ~ 9416207 (-) False triqk

Expression Profile