RNA id: TU476826


Basic Information

Item Value
RNA id TU476826
length 2812
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G401811
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7735631 ~ 7738442 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtacacctgctcacgGTACAAAAAATCTTGCAGCTTCAGTCAATGTTCAGAATTGGGAAGAATGTGACTTTGACCGTGACTTCAATCTGAGGCTACTGAGGCTATCTGATTTGTTGTAGCCCATACACGTCAAGGTTTGGTggtgcatttctgctcaccacggttgtaaagagtggttatttgatttaccatagccttcctgtcacttcaaaccagtctggcgtttctcctctgacctctctctcatcagcaaggcgtttCTGCCTGCataactgctgctcactggatggttttttttttttttccccaacaaaaTTGTGTATGTAAACTCTACGGACTATTGTGTGAAGTTccatgagatcagcagtttctgcagCCCATTTGGCACCATGCGGTCAGTCactcacatttttccccattctgatattcgATGTGAACcctaactgaagctcttaaactgtatctgcatgattttatgcactgcactccCATCAAAtaattgactgattggataattgcatgaatgaccaggtgtactggtgttcctaataaagaggaAAATGAATGTATGTTATATGAATGACCAGTTAATccaataaattatatttgtgttaaTTACTTTGTGTTAATCCCAGAGTTGGTGGCTTTGTGCTCTAATCCACAGAATAATGCAGGGCTAAATCTGTGGGTTGAATATGTTGGTGTGTTGGTCATTGGTTTCCCTTTTTAAAAGTTGGCATTTCTGTCAATCCAGCCAATTAATGCTGATGTCTGTGTCATTGCCCTAGAGCAAGTGCTGATTGCTGACTGCCTAACAGGcttttctattattatattagacACAAGTCCTCAGTGCAGATTTTAATGAGCAATACCGAGCACTCAGGCTCCATCCAACAATTGAGgaagcttgtttgtgtgtgagtaggAGGTGGCCCAATCTGCAAACAGAATAATGAGAAACCGTGAAAGCAGATAAACAGAATATCTCTATAGGGAAAAAAAGCCATTCAGTCCATCTTTCTGCAGTTAATGATGACATACAAGCCCTCTgaatgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggacaatATGACCTTTATGGCCTATGGCAGCAGGGGTGTGCCTATTATACTTGTGTATCCCATGCACAACCATTTTGAGTGTTTCTGCATTTCTTCCCTCAACATGCTGAGGGTGAGAAATGTGATGTCATGAATGTCATCTAGCACATGTTGTGTTCACACCTCTCTGATGCTTGTATAAAAAAAGACGGTTCTTTAAGCTTGTTTTGGGTGGGTGAaccatttttaaacaaagaaaaaaggtttCCAAGGTCATATCATTGTAAAAGTgaatatatttcaataaaatgtttttatttactttctaaccttgcctaggatatctgcctgcaaagatcatgtttaACAAACGCAGTGATAAAaacagtctgcctaaagataaAACTTTGCTAGATAAGTGTGacttcctcacacagtgaatatcaTGCGTTAATCAAGTTGCTGTATAGCTACGTTCCCTAGTAAAAGGGAGTTAAGCCTAATTGGTTCAGTGTGTAATCAGATGCTGGCTGTTAAAATTTCTGCAACGCCACTGCACCGTCACATCAGCATCAAAACAAAGAGCACATAAAGACTCTGTACAGACTGCAGTGgacaaaaaacactgaaaatgtttaaatgacgcatttaaaataaatttagccACCAGAACTGAGTGAATTATTTGAGTGATTAACTGAGTGATTAATTTCAGCACCGATGATCAGTCGAGTGAAGAGACGATGATGAAGCTCATGTTTAAATGCCACAAGTGACTTTCATCTCAGGTGAtaactgatgtggatgatgctgataatcagtgATGACTGATTTCTcattgtaaacttataattctttaaaatttgttttttccATATGTAGATAATGTTTTTTCCATACGTAGATTAGGTTGTAGAGGTAGGTGGGTGGCTTCGAGTGGGATTACAGTGAAATCTTTTAAtcttatttccttttttgtcactttaaaatgctaggatttacatgcaaatgagacacatttcagttcagagaaatgtgtagttttcagaactatatattaatagaaaatgtcaacatttttatcatgttttatgtaccaaaaatattagattgtaCATTTATCATACCATATTTTTTGTTCCATCACTATGTTCTAATGATCCGTAGATCTCTGTGACCAgctatttttttcacattttgaaatgaaagccTAAGCCTTGTAAAGGTCTTTGACTTTCTAAGCGCTAGATGAATCAAAATGAGTCTTTGTATGTGGAATTTGGCTCGCACAGGCATTTATTCTACTTTAATCTCCTAACCTTTTACTGCACTCTTCTCCCACATCCCGATAAGTATGGGAAAAATGTTCTGGCTCTATTAAAAATTGGATTTAGTGCAACTGACACGTTTGTAAGAaagtcaggcttttttttttttaaagcctgaaAAAGCTGAGGGCTAATGCATGCTGTTTGGAAGGTGGATATTGCAATGTGATTAAATCAGTTAAGCACTAATGAGATGCTCTGCTTGTCATCACTCTCCTGGCTTTGGGGACAGTGAAATACAAAGCTGTGTCAGAGACAAAATATCATCCGTTCGATCTCATTTGTGTTTAATAGATGGATGCATAAATGTCAATGGGTTAAAATGTTGATAGAACGAGACAACTTTGTGCAGTTAAAAGAATAACTGCTGTCACAAAGAAATGAGCGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476830 lncRNA downstream 27440 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 167884 7567533 ~ 7567747 (-) True G401758
TU476750 lncRNA downstream 299225 7433787 ~ 7436406 (-) True G401742
TU476699 lncRNA downstream 474417 7257850 ~ 7261214 (-) False fndc5b
TU476698 lncRNA downstream 485291 7248948 ~ 7250340 (-) True G401691
TU476827 lncRNA upstream 168 7738610 ~ 7739244 (-) True G401812
TU476828 lncRNA upstream 907 7739349 ~ 7741757 (-) True G401813
TU476858 lncRNA upstream 77557 7815999 ~ 7827663 (-) True G401835
TU476884 lncRNA upstream 130961 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 583714 8322156 ~ 8323077 (-) False G402090
XM_026942190.2 mRNA downstream 234418 7481825 ~ 7501213 (-) True kpna6
XM_034301501.1 mRNA downstream 258653 7467045 ~ 7476978 (-) True txlna
XM_034301502.1 mRNA downstream 258713 7467045 ~ 7476918 (-) False txlna
XM_026942118.2 mRNA downstream 271173 7453738 ~ 7464458 (-) True eif3i
XM_034301687.1 mRNA downstream 458849 7254433 ~ 7276782 (-) True fndc5b
XM_026942265.2 mRNA upstream 6382 7744824 ~ 7756061 (-) True khdrbs1b
XM_026942299.2 mRNA upstream 43473 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA upstream 43473 7781915 ~ 7783937 (-) False agr2
XM_026942288.2 mRNA upstream 50467 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA upstream 50467 7788909 ~ 7798665 (-) False ppp1r10
TU476702 other downstream 458987 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1299583 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1361141 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1560371 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2145884 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1410069 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1488953 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1638484 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1648560 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2764847 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile