RNA id: TU476828


Basic Information

Item Value
RNA id TU476828
length 2409
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G401813
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7739349 ~ 7741757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGCAGTCTAATCTTGTTTACATTGAATAAGCCTTTTCCTGAGcagatttaatattatttttgtcttggtAATAAGACTGACGATAGCTTTGAAGAACAGACAAATCCAGGATCATGTCAAATCCAATCCAGCTAACTGGGTAATACTTATAAACCATGTATAAAGAATGGGAACCAGCACAGGCTCAGTGTCTGTGGAAAAGGGATATTAAAGTGTTTaacacatttctgttcattctgGTGAGTTTGGACTCAAATGTCTCAGCATTGCCTCATATTTGATTGTTTTAGTGTTTCATATTGCTGCATGTCCTGGTCATTGTtactgatttgatttgatttcctGCAGGGAAGACCGATTTGCCGTAAAGAGGCGGTCTTAAATTTCAGCAGGCATGCTTTTTGGGGAAAGAACTCTGAAATCTGCAGAGATGGAGTCGAGCTGAAGTTCTGCCGGACGCCTTTCAAGAAGGCAGAAGCCGGAGTGCTAGGAAAGTGCATCTGTGAGTcttaaaaaggaaagaaaaaggaaatcgATGCTCTCCTCGGCGCTGCTGCCAAAGCATGCGGGCACTTATTGAGCTGGAGCGGAAAGCGGCTTACGTGTCCTACAGCGTCCAGTGGtcgtgtttgtgtgcgtgtatgtggtCACATATTGGAAATGTGTCTGGCTCATTGTTGTCTTTGTGAAGCTTCCAGccttatttttttcactttattaaggTCTCTCTAAAGCACACTTAATGCTGTCCTGAAAATGACCAGTGTCGTTTTTGTCATCGTGTTTTTTTCCACCCTCATCGTCTACCTCATTTAatagcattttttccccccctcccTTTTGCACCCGGACAGCAACCCACTCAGAGCAAGTAatttactgtgtgtatatatactgttttcacatttacaatatttactgGACTCTCCTGCAACATGCACATGGCTATATGTTAGAGTTTTCACAGTAATGCATAAATACAAACGTGAAAAGCAATGCATGCACTTCAGCAGTTGTTGTGCTTGTACGAAAATAAGTGCAGTTGTCATGGCAATAACCAAACTGCAGGAAAATTGGAGTCTACCTGTATTTTTCTGAATTATAAGACTCATTTCTGGTGCTACAACATATAcactgaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatctaagGGTAGTGTGCCATCATTTGGAAAATACAGTGATTATGATTTGGACATTGGACATTAGCTTTTCTCTGCCTGagggttttttccccctccagTTTATGGCATCATGGGGATTTATAGTAGAACAAAGGCACATTAGTATTTGTGTAGTATTTGGAAGTCATGTttggttgtgtttgtgttgttgggCAGCATTTTAACTAAAATAGACCCTCAGCACGCAGCGCAGGTGGGACTCCGTTCAGCATCATCAGACACCTTTTCAGTCTCTCACTGGGTTCTCGGCTTAGATAAACACAACTAGGTTTTTGTGAAGAATGTACCGCAGCGGtattgatttgtgtttttaaaatgttcattattaaatagTGTTACAGTCTTGAATATTAAAGTACATCATATTACAGATTACAAGCACATGGCTGCTTCAGTATGACTAATACAAGTAGGTCTTAATTTCCACGCCGCAGTGCCACCAGGGCCTGTTGCTCCACCGAGCCAGAATGATCCTTTCGCCTTTTGAGGAAAGGAGTGTTTCAAATATACAGCAGTGTGCACCGGCGCGACAAGCCGAGAATTGGGCTTTGGAGCTGAAATGCCTTACCCCAGgcattgtgagtgtgtgagagcactCAAGCAGATTCTCAGCACTAAATTTGAGACCATATTCGAGCCAGATGGGAAAACCATGCTAGCTTGCATGATGACTAAGCAGAGTTTCATAGAATTAAAGCCTCAGTTCAATCCCAATTAATAACAGAGAGGGCTAAAACCAGTGTGTGCATTAGGACAGATCTGTTTACACTCACCAGCTGCTTGAATAGAAACATGTATTTaaagctcaccaaaactggagaGATGAAgatgattggaaaaagacccagagtttttccagtctttaactgCCCAGTTTCAGTGGGtttgtgctcactgtagcctcagattcatgttGTGATCTGACAGGAGTACTCAAAGCAGGCTGTCTGGCACCAAAAACCATGCCACGGTCCCAAATCAGAGATTGGTGCATTCTGAtgttgatgtgaatattaactaaaGCCCTTGATCTCTGTGTGCATGATTTTAAgcgttgtgctgctgccatgtgattggctaaTTGCATGACTGTccaggtgtttctattaaagtgaccaCAGAGTATACTATAGTTTTACAAACATAAGACAAACgccataattttaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476827 lncRNA downstream 105 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 907 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 31158 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 171602 7567533 ~ 7567747 (-) True G401758
TU476750 lncRNA downstream 302943 7433787 ~ 7436406 (-) True G401742
TU476858 lncRNA upstream 74242 7815999 ~ 7827663 (-) True G401835
TU476884 lncRNA upstream 127646 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 580399 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 580762 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 678630 8420387 ~ 8448303 (-) True G402120
XM_026942190.2 mRNA downstream 238136 7481825 ~ 7501213 (-) True kpna6
XM_034301501.1 mRNA downstream 262371 7467045 ~ 7476978 (-) True txlna
XM_034301502.1 mRNA downstream 262431 7467045 ~ 7476918 (-) False txlna
XM_026942118.2 mRNA downstream 274891 7453738 ~ 7464458 (-) True eif3i
XM_034301687.1 mRNA downstream 462567 7254433 ~ 7276782 (-) True fndc5b
XM_026942265.2 mRNA upstream 3067 7744824 ~ 7756061 (-) True khdrbs1b
XM_026942299.2 mRNA upstream 40158 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA upstream 40158 7781915 ~ 7783937 (-) False agr2
XM_026942288.2 mRNA upstream 47152 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA upstream 47152 7788909 ~ 7798665 (-) False ppp1r10
TU476702 other downstream 462705 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1303301 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1364859 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1564089 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2149602 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1406754 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1485638 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1635169 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1645245 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2761532 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile