RNA id: TU476858


Basic Information

Item Value
RNA id TU476858
length 200
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G401835
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7815999 ~ 7827663 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcaccctgtccagggtgccCCCctccttgtgccccgagtcccctgagacaggctccaggctaccctgtgaccctgtgtagaataagcagtacagtggatggatggatggacatattgaattttttatccatttatagttacttttagtGTTCTGAAAGTCCATGATGCAAATTAGTTCTCGGTATCACTCTATGTTATA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476828 lncRNA downstream 74242 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 76755 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 77557 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 107808 7707862 ~ 7708191 (-) True G401815
TU476768 lncRNA downstream 248252 7567533 ~ 7567747 (-) True G401758
TU476884 lncRNA upstream 41740 7869403 ~ 7917693 (-) False tmem64
TU477149 lncRNA upstream 494493 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 494856 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 592724 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA upstream 606181 8433844 ~ 8436904 (-) True G402122
XM_026942288.2 mRNA downstream 17334 7788909 ~ 7798665 (-) False ppp1r10
XM_034301499.1 mRNA downstream 17334 7788909 ~ 7798665 (-) False ppp1r10
XM_026942289.2 mRNA downstream 17334 7788909 ~ 7798665 (-) True ppp1r10
XM_026942299.2 mRNA downstream 31938 7781915 ~ 7784061 (-) True agr2
XM_026942300.2 mRNA downstream 32062 7781915 ~ 7783937 (-) False agr2
XM_034301608.1 mRNA upstream 16800 7844463 ~ 7858199 (-) False bag6l
XM_034301604.1 mRNA upstream 16800 7844463 ~ 7858199 (-) False bag6l
XM_034301607.1 mRNA upstream 16800 7844463 ~ 7858199 (-) False bag6l
XM_034301603.1 mRNA upstream 16800 7844463 ~ 7858199 (-) False bag6l
XM_034301605.1 mRNA upstream 16800 7844463 ~ 7855931 (-) True bag6l
TU476702 other downstream 539355 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1379951 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1441509 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1640739 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2226252 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1320848 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1399732 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1549263 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1559339 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2675626 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile