RNA id: TU476884


Basic Information

Item Value
RNA id TU476884
length 2009
lncRNA type sense_over
GC content 0.37
exon number 2
gene id tmem64
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 7869403 ~ 7917693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCAATATTAGCTATTTAGCTAGTTACCAATGTGGTGATTAGTTGTTTGCTTTACATAAGAACaatattagctagttagctagttaacaaCATGGAGATTTTGTATCCCTTTTTCGGATTTTTTtttttttttttttttttatataaaccttTTGCAGTCTTTCAATGTCACTAATTCTTAGCATCAACACTATTACATGGCAGTTCCTTTAGTTGGAATGCCTTTCTCTTTTTCCGTCTTCTGATGACCTTGAAAGCCATATGACCAGCGGCAAGCCActaatgaatgattttaaagttagaaagaaaaaaaaaaacgagtatGACTTAGCTtacctttaaaatgtttatgcaaCAGAGATGAGTAGGTTTAAgttctgtatatttgtatatacacagggatggacaaatcataaattcattagcagTCCACTGAGCAAGTTTTGGTTGTCTGGAAACCTGACTAGGCTAACGTAATGTATGCTAATAACATATTTCATGCTAGTTAATTAGTAAAGGGCATAAATAAAGACTAAGCGAGACAAACAAGTATATGATACTTTTCCTTATATAAGAACGTTTTAATGTAGCACACTGTGTTTGTGCTCTCGGAAAGTCATTGGCGAACGTTTGGTTCTGTCCTCACACCACAGGTAAAAATATTGTCCGAGTCTGACCAGcgtctttctttctctcgacATGTTCATATACAACAGCTTTGCACTGGGCTTCACTGTTTCCATATGCATGTTCTGAAAAGATTATTCTACTGACAACCACATCGCTCTCCTCAGgagatgtgtgtagtgctgCAGGCGGTGGGATTCGTAACGATTAGCTCGATTATAGTTACAGTAACGAGGTGCGTCACATCACAATAAGCCGCATTatgtttacataaacacacacatcatatgaAACGGCATGCAACTACGAATTAAAAGTAACATCGCGGCGGCAAAATCTGCTTGTCCAAGGCACCCAGgttactgatttgtccacccctgaaaAGCTTTTAACTATTATCTGCTATAACTGTTGTTCATTTGTTACaatacaagattttttttttaacttggcCTTTAGTTTTTGACTTTTTAGTGTTCACCTACTACGTATCTGGAATCATCCATAATTTTGTCGACTCTACTTCTAACCTGACAGTCGACAGGTGTGTGAAAGGTTAGTCATTTTGAAATCCATGCCACATTacttgtccatttttttttgacatccTAATTCCaatgttgttgctgctgcttaGACCCCAGGGTCTGAGTGAAATGCTGATAAGGGCTCGAATATTTACACATCAACTTCTACACTTATCTTTACAGGctcatattaatataaatggcTATAAATTAGCCTATGAACTTTTATAACAGTTTGGTACATCAGTTTTCACACTTGCATGTTGTATGAAATGGCACACAAAAATGGACATTCCttgctgatatttctgtccAGATCAGTTTGAAGTAGGAATGTCCCCTCCATAAATTTAGCAATAACTGGAAACAGAAATGTCCTTGAGTTAGGTAGAGAAATGCAACATTCCTGGTCTTGTGTTATGATGTCAGCCTGCCTTGTACCTCTTGCTGCCTATGACAGGACATGACACTAGCCTGTGGCATGATCATACACCAAGTTCAtggaaatgaatattaaaaaaaaaaagatataagaTGTCGaatgcaaaaaaaggaaaagaaattacAAACTATTTAATGGGTAAATGGGTTTTAcacatagtatttttttttgttgttgtttaatcgATATTTCTGACATAATTATGCAACAGAGGAACTCTATAAATCTGACATGGGGATGAAATGACATGGTTCTTGGCGAGGATTTATCTGAGATTGcacacacagctacagcacATCAGAAACCCAGTGCACATGTGATTTCAGATAAATACAAATCAGGGACCGTTACGAAACCTCTGCCCCATGAATCAAGTGCATTTATCAATTCCGCTGTATTTTGTAATACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476858 lncRNA downstream 41740 7815999 ~ 7827663 (-) True G401835
TU476828 lncRNA downstream 127646 7739349 ~ 7741757 (-) True G401813
TU476827 lncRNA downstream 130159 7738610 ~ 7739244 (-) True G401812
TU476826 lncRNA downstream 130961 7735631 ~ 7738442 (-) True G401811
TU476830 lncRNA downstream 161212 7707862 ~ 7708191 (-) True G401815
TU477149 lncRNA upstream 404463 8322156 ~ 8323077 (-) False G402090
TU477147 lncRNA upstream 404826 8322519 ~ 8324199 (-) True G402090
TU477180 lncRNA upstream 502694 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA upstream 516151 8433844 ~ 8436904 (-) True G402122
TU477192 lncRNA upstream 531802 8449495 ~ 8508126 (-) True G402129
XM_034301608.1 mRNA downstream 11204 7844463 ~ 7858199 (-) False bag6l
XM_034301604.1 mRNA downstream 11204 7844463 ~ 7858199 (-) False bag6l
XM_034301607.1 mRNA downstream 11204 7844463 ~ 7858199 (-) False bag6l
XM_034301603.1 mRNA downstream 11204 7844463 ~ 7858199 (-) False bag6l
XM_034301605.1 mRNA downstream 13472 7844463 ~ 7855931 (-) True bag6l
XM_034301795.1 mRNA upstream 9752 7927445 ~ 7938210 (-) True pip4p2
XM_026942220.2 mRNA upstream 476830 8394523 ~ 8417397 (-) True smap2
XM_026942222.2 mRNA upstream 476830 8394523 ~ 8417391 (-) False smap2
XM_026942221.2 mRNA upstream 476830 8394523 ~ 8417383 (-) False smap2
XM_026942393.2 mRNA upstream 534393 8452086 ~ 8544860 (-) False col16a1
TU476702 other downstream 592759 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1433355 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 1494913 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 1694143 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2279656 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 1230818 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 1309702 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 1459233 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 1469309 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2585596 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile