RNA id: TU477180


Basic Information

Item Value
RNA id TU477180
length 1338
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G402120
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8420387 ~ 8448303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGGAATgacacaatatatattttccttCATTCGTACCAAACATtagccacatacacacacactcaactgaacactaTTCCCTTTgcagtttttgcacatttctttcttactgCTAAAATACGGTAATCAAAATACTGTATTGACCACCTGCATTTATGCTGcaaactgtttacatttacaacatttattattatattataatatctaGTTGTACTTTAttccacactagaactgtgtactggtcagtgctgcactgtcctttactgtgccTGTTGTCTTGTTTTAGTAATTACTGTACTGTCTTGCACTGTTTGCACGTTTGCagatgtgcactttatgtagtcctgtgtatgtctttgtgttcttatttagttctgtgtagtctcatgtagctctttgttgtttttatagcaCCATGGTCCAGGAGAACTGTGTACTGTATCAGCTGTATACGggtgaaatgacaataaagccagcTGAACTTAAACTTGAACATAAGATGTACCTGGAAGGCCAGGTGGCCCTGGTGGGCCTGGATGAGGGCGACCAgggtctcctctctctccctttgcACCTCTTACCTTTAAGGCCAGTGTTTCCGATTTGGCCTGCAGCTCCGATCACGCCAGGGATGCCTCGGGCACCAGTAAGGCCATGGGATCCCTGAGGACCTGGAGGTCCGGGAGGTCCTGGAGGGCCTGGTGGTCCCATTACTCCAGCACCTCCTAATGCTCCCCTCTTACTGCTCACTGCTAAAGCAGCTAACCTTTCTGGTGGGAATAACAGAGTATACAGTAAAATGGTCAGCGTCTTAGTATCACTTAAATAATGTGCAAACatgaattaaatattcattcatttacagcaGGGCAAATGATATTAACTCTAAATGATATTGACTTACAGTACGTAAAACTATTTAGCACTCTTCATAAGAGTGAGTCaaaaattactgtatataaacaaaatacGCTTCATACACATTTATTGATTGGTTTGCACATTAGTTTGAGACCATGAATTGGAGATATTTACCTTTCCTCTAATTGGCATtcctaaagaatatttaaataaatgcaacttttaaccattttaaacaATAGTATGCTCCTTGCATCTGTTTTTGCAAACATGTATAAATATCATCCATCACTACTATCGAAACGATTGGTTCATATGTTTGTTCAGACCAATCCTATGGACTGcagctcctctcctctcctctcctggcTGCTCAGTCCAGGACAGAAAAGTTCCGGGTGCAAGAAagacctgtgtgtatgtgtatgtgtgtttgagtgggGTAAAAGGATGTAACCTATCTGTACAGCCAGCC

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477147 lncRNA downstream 96188 8322519 ~ 8324199 (-) True G402090
TU477149 lncRNA downstream 97310 8322156 ~ 8323077 (-) False G402090
TU476884 lncRNA downstream 502694 7869403 ~ 7917693 (-) False tmem64
TU476858 lncRNA downstream 592724 7815999 ~ 7827663 (-) True G401835
TU476828 lncRNA downstream 678630 7739349 ~ 7741757 (-) True G401813
TU477192 lncRNA upstream 1192 8449495 ~ 8508126 (-) True G402129
TU477221 lncRNA upstream 73055 8521358 ~ 8522044 (-) True G402142
TU477491 lncRNA upstream 163815 8612118 ~ 8614804 (-) True G402405
TU477770 lncRNA upstream 690714 9139017 ~ 9141823 (-) True G402674
TU477769 lncRNA upstream 695567 9143870 ~ 9161470 (-) True G402673
XM_026942220.2 mRNA downstream 2990 8394523 ~ 8417397 (-) True smap2
XM_026942222.2 mRNA downstream 2996 8394523 ~ 8417391 (-) False smap2
XM_026942221.2 mRNA downstream 3004 8394523 ~ 8417383 (-) False smap2
XM_034301795.1 mRNA downstream 482177 7927445 ~ 7938210 (-) True pip4p2
XM_026942388.2 mRNA downstream 532532 7870336 ~ 7887855 (-) True tmem64
XM_026942393.2 mRNA upstream 3783 8452086 ~ 8544860 (-) False col16a1
XM_026942396.2 mRNA upstream 3783 8452086 ~ 8544860 (-) False col16a1
XM_026942394.2 mRNA upstream 3783 8452086 ~ 8544860 (-) False col16a1
XM_026942395.2 mRNA upstream 3783 8452086 ~ 8544860 (-) False col16a1
XM_026942392.2 mRNA upstream 3783 8452086 ~ 8544860 (-) True col16a1
TU476702 other downstream 1143743 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 1984339 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2045897 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2245127 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2830640 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 700208 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 779092 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 928623 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 938699 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 2054986 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile