RNA id: TU477192


Basic Information

Item Value
RNA id TU477192
length 410
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G402129
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 8449495 ~ 8508126 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATATTTAGTCCACATTATATATttagtccacacacacacacacacacacacacacacacacacttacaaagagagagacacacatgcAAAATGTCAAACTAAACTGCAAAGTCAGCCGCTCAGGACCGTTGCACCATGCTGATGTCCCATGAAAGAAaggtctgtgtgtctctcttctTATAACGCTGATGTTTTAAGGCTTTAAGTGGACGGTCCCTTGACTGTACCAGCTTCCTGGAGTCGTGGGGAAGTGTAAGCCGACGCTGCCAGGCATGCTGCCATTTCACAGAAGCCAGGGAGGCCAGGAGGACCTGCCTTTCCGGGATAACCTGGTTGACCCGCTACACCCTGTGGCCCTCTTTCTCCCGGCTTGCCGTCCCGTGCAACTCCATCCACACCAGGAGGAC

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477180 lncRNA downstream 1192 8420387 ~ 8448303 (-) True G402120
TU477182 lncRNA downstream 12591 8433844 ~ 8436904 (-) True G402122
TU477147 lncRNA downstream 125296 8322519 ~ 8324199 (-) True G402090
TU477149 lncRNA downstream 126418 8322156 ~ 8323077 (-) False G402090
TU476884 lncRNA downstream 531802 7869403 ~ 7917693 (-) False tmem64
TU477221 lncRNA upstream 13232 8521358 ~ 8522044 (-) True G402142
TU477491 lncRNA upstream 103992 8612118 ~ 8614804 (-) True G402405
TU477770 lncRNA upstream 630891 9139017 ~ 9141823 (-) True G402674
TU477769 lncRNA upstream 635744 9143870 ~ 9161470 (-) True G402673
TU478003 lncRNA upstream 1112004 9620130 ~ 9620599 (-) True G402892
XM_026942220.2 mRNA downstream 32098 8394523 ~ 8417397 (-) True smap2
XM_026942222.2 mRNA downstream 32104 8394523 ~ 8417391 (-) False smap2
XM_026942221.2 mRNA downstream 32112 8394523 ~ 8417383 (-) False smap2
XM_034301795.1 mRNA downstream 511285 7927445 ~ 7938210 (-) True pip4p2
XM_026942388.2 mRNA downstream 561640 7870336 ~ 7887855 (-) True tmem64
XM_034301651.1 mRNA upstream 106879 8615005 ~ 9005331 (-) True adgrb2
XM_034301689.1 mRNA upstream 719269 9227395 ~ 9284493 (-) True runx1t1
XM_034301690.1 mRNA upstream 719269 9227395 ~ 9269400 (-) False runx1t1
XM_026942283.2 mRNA upstream 719269 9227395 ~ 9251794 (-) False runx1t1
XM_034301688.1 mRNA upstream 719269 9227395 ~ 9251794 (-) False runx1t1
TU476702 other downstream 1172851 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 2013447 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2075005 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2274235 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 2859748 5587398 ~ 5589747 (-) True G400815
TU477767 other upstream 640385 9148511 ~ 9161470 (-) False G402673
XR_004577570.1 other upstream 719269 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 868800 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 878876 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 1995163 10503289 ~ 10503361 (-) True LOC117596479

Expression Profile