RNA id: TU477767


Basic Information

Item Value
RNA id TU477767
length 5858
RNA type TUCP
GC content 0.37
exon number 4
gene id G402673
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9143870 ~ 9161470 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGtcatttaattgtaattttaattacCACCACCCAAAGTCTTCATTTACAACAACATATTCTGGAACACCACCAAAACCTTCGTCACATGCAGACTGAGGACACTTTAGCAACAATCTTTTCAGGAGCTTTATTCATTTCGTCCAACACTTCAAGTAAAaaccagaaaataaaacaaaaaaaaaaaaaaaacatgataatacAACAAACTTCTAATGTGTTAAACAGTCATAGTTGAAAAACCTTTGCAGAAAGTATCTTTTCACAAAAGCATCTAGTCTAGTTAAGAAATTTTTACAAGTTTATTATATTAACTAGCAAACATCTGATGGGGGCTTCTTCTGCTTTACTGCAGTCCTGTAAACAAACTCGCATTTCTTGATGGGGCTACCGTCTTCAGTAGCATCTGGGTAAGTTAAGTAGAATTTCAGTTGTACTTGTTGTACTAATGCAGTATAATATTCCAGCAATGACTAGCATGTAGGGGACTCCTACATTTCTGCTTGCACATGCCAAATGTTTTGCAAGGTTACAAATTACAGAACTGAGGGATTTtagtttacttttaatttttaaggaGAGGCAAAAGTGCCATCATGAAAGCAATTATCAGTTCAGTATTCACCTATATCACATCTATCGATTTATCCGTTTAGAAAAGTTTGACTTGTGGTTAAATTACATGATCTACAGAATTTAATCTACATGTGCATAGTCAGAAGCTATAAAAATCAAAGCTGAAGGCACAAATTTTGGCTTAACTAATTAAAAAGTTGATTTGAGGAATTCCATAATCTgtaaattaccagtagagataaaagcaaaatgtaatgtatttatgaaaaaaatgtacaaaattttccatgTTATCAGGATACATAAAGACCTGCCTTTGAAGGGACAAGCATATGAGCTTCCCCCAAAACTAATCTATTAATGTGAGTGTCATTTGTGTGGTGCCAGACCTGTCAGTTCCAACAGAACCTCCATGTGATTCCACCATGATCCTGAAAATGCTGAGTAAATGTAGAAGACATTCAGAGCTAGAATACTAGATGAAAAACCTGTAAAATGTCGGCTCAGCTTTAGTAAACACTGTTTTAAAGGACTACAATTTTCAAGTCAGCTTACTGAAACACAAAAGAAGTGACTCAGCTTACACACTAGAATTGTCACAGGTACCATAAAACCATGTGTTCTGAGATGTTATATTACCAGGAATGGACAGACTATTAGCCTGGGACAAGTAGATTGCACATCCAggctattatcattattatttttttaaaaactggcaTCGATGAAACAAAATGCTGATATCAATCACTAGAGTTTTTCTCATGTTCAATAGCCAGACAAAGAAAATCTTTCCAACCAAAAGCTTCTGTCTGTTATGGATGTTCAAATATGGATGCTTCTCATTGTGGCATTGCACACCTCACTATTTAAACTAGAGCATGCAacttgtaaaaataaacaaatctttgtttaatttagcTCAGTATAACTGAAACGTATGAATTGTAATTCTCATTGAGTTATgctcattttacagaaaaatcacatcatACTTACACCCTAATGCAACGAATTGCCAAGTTTCATTCGCTCTGCGTAAGATCTTCCAAGAATGCTTTAACATGGTAACAAACATCTTCAGCACTCTCCGATTGAGTGCATACAGTGAGTTGGTTAAGTAATTCGGAATCCTTCAGTTTTTGTACTTTATTGCattatagattttaatttaaaattgattaaattTACTCTCTTGGtcattaatctacacacaataacccataatgacaaagggagaggggaaaaaaaaaaaaaatttttacaattttttttttgtgcaaactttttaaaaagcaaaaagtgaAATCTCTCATTCAGAGCCTTGGCTACAATGTTCCAAACTGACCTCAGTTCCATCTTGTTTGCCTTGTTTATCTTGAAATGTCTGTAGAACTCGAGTGGAGTCCATCTGTGGCAAATTCAACTGACTggacatgatttagaaaggcCCAAACCTGTGTATAAGGTCCCACAATTTACAGTGCATGTCTGAGCAAAAACCAAGCGATGAAGTCCAAGGAACTCCGAATGTTCCTAGGAGCACAGTGGACCCACCAGGACTCTTTCTAGTGCTAGCTGTCCGGTCAAACTCAGTAACTGGCCTACAGAGGCCTTGGTCAGgaaggtgaccaagaaccccaTGGTCACTCTAACAGAGCTTCTGAAGTTCTCTGCAGAGATGGGAGAATCTGCTGGAAGGACaaccacctcagaaatattacAACAATCATGCCTTTAGGAGAGAGGCATGAGGaaaagattctctggtctgatgaaggaggggagaaaaaaacaacgcTGGGATCAACAGCAAGCACTATGCCTGGCAAAAACAAGGCACTGTTTTGGCTAATACCATCtctatggtgaagcatggtggtggtatcATCACACTATGGGGTGCTTCTCAGCATCCGGAACAGGAAGACGTCAATCCTTGTTACTCAGTTACATATAGTCATCTTTAGCTTGTAGCACGCACATGACTCAAGCAACTTGCACGGAAACCAATTCAGAAAAATCTTTCCACTTCTAAACAAGTCACAGGACTTTAGGTCGTTAGGTTGTAGTCCTAGCAAGCTGAAACGTTATACCTCTTAAAGAATAATATATATTAGCACATGTACATAATCAAAAGAACTTTATTATTCAAAGATAAATTTAATTGTCCATTCACAGCAGAAGTAATGGCATCACTGCTATTTCAGAGACTAAGATTTTAAGCCTCTTAAAAGCCGTGGTGCATGTGTTTCTAAACATAAGGCATGCTGACTGTTTACCTTCCATTTGACAGTACATAACATTGCAAATTAACTGATGCCTCCTTGATTCAACATCCTTCAGCCTGTGACCAGGAAATCGATCAGACAGGCATCTAAAGACGTACAAATGCTCTCAAAGGAATCAAGGAACAAGGAAATAGGACACTTTTAGGTCGAGTACCTAATTCATCCTACACGGAAGTATTTTTCTGTAGAATGTCCACCACTTCTCCCAACAAATGAaacaattaatacaaaataaataatattaattaaattacaatgAATACAAAAGCCTTGGGGGAAAAGTCAATTAAAGCGTGCAAGGCTTAAACAAAGTGTCTCAAGTCTTAAAAGAATTTTGTAGACTAGAACGAGCATTTAACTGTGTAATGCACATATACAATAACTAAAATCACTGAGTGCGTTACCACACCACATGGTATATAAGTAAATAACTTTAGAGCGACACTTCAGTAAGCGACGCATGTATTTGGTCAATATGCTCCCAATTCTTCAAGGCAGGGGATGCTCAGAGGTTAAGGCTTTTGGTTACTGATCAGAGTTCAAACTCACTGGTttcctttcaaAACAAGGCACTAAGAAGTGAGAAGgggaagcacaaaaaaaaaaaagaaaTTTCCTAGGGTGCTTAATTTGATTAATCAATGCAGGATACACCACTGGGTTTCTTTTTGGATGAGGAGGCATCATGGAGGTCACCCCCTTTGCAGATGAGGCGATATGAGAGCTGGTGTACTGTTGGATGATGAGGGGAATCCGTTGCCTCCTACACTAAGACTTTTCTCCTTGGTGTAAGATGTAGCAACAAAATGGGGTTCATTACAAACTAAAAGACTAGATTTTAGAATTTTTGGTCATAGTTACCGCCATCAGAATTGGCCTACAGATATAAATTCTTGAAGTGCTTATTTTAAAGGCACTCGTGATTCATAATACTGAAGTAATATGTAGGTATGTATTCACTCTTGTTATGCTACAGCTAGTAGAAAGTTCTGATTCTTTTGTAGATTTAGCAAAACTTAAAGACTCAAagatatccatccatccaaacataTTTTAATTGCATAAACAGGACAGCACTTTATAGCACGGCATTAAACCCTCACTAATGGAGGATGCATGGATAAAATCCGTCACAAGTTCTGGTGCACACAACTTTGGACAGTCACCTGTTAAGGAAGAAAATATACAGACGACCAACAAAACACAATGGCAAAGACATTTTTATGGATGTATTTAGCTCCAGCCATACCACCCAAAGTAAACCACCCCATGATCATAATCATACCCAATCTGCATTGATACATACTCAGGCTAATAACTCACAACTTCTAGGAAGTCTGATAGGAATTCAAGAACTTCCATTTTCTTGcagaaacaaataataaaaataagctgtAACAGTCCTCAAATGCAAGCCTTTAGAGCCAAGACTCCATTAGAACAATTGTTCCAGCAGCAGAGTCCTACAACCTGAAGGCAGCAAAGTAATTAAAGAGGGCTAAAGACACCATTGCTTTGCAATATTAGCAGAAttctacactaaaaaaaaaaaaaaaaaaagcttgaatgAATCCTACTTAGCAGTACAACATCTTGGATTAGCATTACCACGAATTTGCCTCACCATGTTAAAAGCAATAACTGTATGGTCGTGGGGAATGCTTGAAAGCCATATAGTAAAATGCAGGTGGTAGCATGCATTAccttgttgctttctttaccatGCCTCAAATTTCCTGAATGTTTGTTTGTACAGGTAATTACAATATGTCGGTAATATCTTTAGGCTGGTGACCGTCTATAGGTCTTAGCATGGTAACGTTCATATTGGAAAGCATGACAACCACAAAACTCTTGAAATTTTAACAAACTTACCTACTGCAACTTTAAATGCAGGTTTTAAAAGTCTTGAAAATAGTATGGCCTTTTATAATGAGAATCAAACTGAATGCATGCCAGGCTACTGAAAAACTGAAGTTCTTCAAGCCTCCATTCCATACTGCACATCCCAAACCAAGCATTAGTATGCACTTCAGGGGTGGACAAAACATTGGCCCATATACCctggacaagcagatttcatacctgggcatttttttttttaattcacagttGCCCGACAGACAAATAGGTTCAACAcccataaaaacaaacaaagaaaaaatactcCTCAatgacttgtgcaaaacaaagttacattttgcaTGTAGGCTGTTTACAGTGTTTCAAAGTGGTACATATGATGGTGTAACTACAGCACAAACACCTCGCTCTGACTCCTcacaccacctgctgcactacacgcATTTGCCAAAGCGTAATCTGGCTGAGTCACTTTCTCCCAGTCAGggtccggagcctatcctgtaAGACTAGGTGAAAGGGGGCAACACTAGGGGCAATTCAGCATAGCCAATGTGCCTACCTGCATTAGCCAGACTCAATATCTTTTACATGTGATGTGGGGACTGACCACAACAGCTTTTACATACTCACTAGCCACATCAGTACATTAGCTTTAAGTCAGTTACGTCTTCAGGCAACTAAAAGAACAACTGGGGGCTTTTGCTTGCCAGATGAGCTAGCTAacgaatttatgatttgtccacccctgtatTTATTAATCCATGTGGTGCATAGTCCTAGATAAAGTTTGAATTAACTGAATTCAAACACTAACAAGAACCAAACCCCAAATATTTCatgaatcatattttctttGTAGGTGCTTAGTGAATTTTTAGGACAAAGTCAAACACTGTGCTAAAATGTTGAAGTGGGGTTTGAACAACCAAATGTACTCTTTATTGCAAATTACATGGATTATCTCAAAATGTTGAATGGCACAGAACATAACCATAGAAACAGCAGAACAACTTACAAGAATAACCAGCGTAACAAGTAACATTGCATGATTATATACGTAGAAAAGGAGAATACAACAGGATGTACTGAGCAAGAAGACCCTCTTGCTGAGCAGTTCACTACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU477770 lncRNA downstream 6688 9139017 ~ 9141823 (-) True G402674
TU477491 lncRNA downstream 533707 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 626467 8521358 ~ 8522044 (-) True G402142
TU477192 lncRNA downstream 640385 8449495 ~ 8508126 (-) True G402129
TU477180 lncRNA downstream 700208 8420387 ~ 8448303 (-) True G402120
TU478003 lncRNA upstream 458660 9620130 ~ 9620599 (-) True G402892
TU478213 lncRNA upstream 569213 9730683 ~ 9731257 (-) True G403080
TU478200 lncRNA upstream 598175 9759645 ~ 9760497 (-) True G403072
TU478220 lncRNA upstream 603204 9764674 ~ 9764904 (-) True G403086
TU478269 lncRNA upstream 701563 9863033 ~ 9863314 (-) True G403134
XM_034301651.1 mRNA downstream 143180 8615005 ~ 9005331 (-) True adgrb2
XM_026942393.2 mRNA downstream 603651 8452086 ~ 8544860 (-) False col16a1
XM_026942396.2 mRNA downstream 603651 8452086 ~ 8544860 (-) False col16a1
XM_026942394.2 mRNA downstream 603651 8452086 ~ 8544860 (-) False col16a1
XM_026942395.2 mRNA downstream 603651 8452086 ~ 8544860 (-) False col16a1
XM_034301689.1 mRNA upstream 65925 9227395 ~ 9284493 (-) True runx1t1
XM_034301690.1 mRNA upstream 65925 9227395 ~ 9269400 (-) False runx1t1
XM_026942283.2 mRNA upstream 65925 9227395 ~ 9251794 (-) False runx1t1
XM_034301688.1 mRNA upstream 65925 9227395 ~ 9251794 (-) False runx1t1
XM_026942443.2 mRNA upstream 225525 9386995 ~ 9416253 (-) True triqk
TU476702 other downstream 1871867 7261340 ~ 7276644 (-) False fndc5b
XR_003404453.2 other downstream 2712463 6435987 ~ 6436048 (-) True LOC113543912
TU476305 other downstream 2774021 6371650 ~ 6374490 (-) False polr1h
TU476079 other downstream 2973251 6172988 ~ 6175260 (-) True G401205
TU475643 other downstream 3558764 5587398 ~ 5589747 (-) True G400815
XR_004577570.1 other upstream 65925 9227395 ~ 9251794 (-) False runx1t1
XR_003404456.1 other upstream 215456 9376926 ~ 9377039 (-) True LOC113543915
TU477891 other upstream 225532 9387002 ~ 9416207 (-) False triqk
XR_004577593.1 other upstream 1341819 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 1342323 10503793 ~ 10503874 (-) True LOC113543917

Expression Profile