RNA id: TU478213


Basic Information

Item Value
RNA id TU478213
length 473
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G403080
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 9730683 ~ 9731257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCAGTTCAGCCCTCCGCTTCCTGCAGCACTGTTGGACATTTTCTCCTATTGTGTCTTTCCTTCCAAGGTGTTACAAACGagcagtgtttataaaaaaaataaaaaaagaaaatgtcctTAAATGCAGTTTGGCGTTAAATTGCCTTCCATGTGAGCCGTGAAGCAAGCTGAgaggagtgagagtgtgtgctgGAATGAATTACATGGAAGCTGAGAGGTTTTTAGCCCGGAGAAGTGAGAGCACTTCGGCTATTGTTAAAATCGACCGGCGGTACAGCAGCAGGCCTGagcgcctcacacacacacacacacacacacacacactcactcacacacacacacccctaaccCTTTACATTACATTCTAATAAAGGTGAAACAGGAGCACTCTGTGTTTCTCCTCATGTGCAGCTGCTGCTTTACTGCCACATTTCCTGGATTTTCATTCAGAAACAATAACACTGGCGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478003 lncRNA downstream 110084 9620130 ~ 9620599 (-) True G402892
TU477769 lncRNA downstream 569213 9143870 ~ 9161470 (-) True G402673
TU477770 lncRNA downstream 588860 9139017 ~ 9141823 (-) True G402674
TU477491 lncRNA downstream 1115879 8612118 ~ 8614804 (-) True G402405
TU477221 lncRNA downstream 1208639 8521358 ~ 8522044 (-) True G402142
TU478200 lncRNA upstream 28388 9759645 ~ 9760497 (-) True G403072
TU478220 lncRNA upstream 33417 9764674 ~ 9764904 (-) True G403086
TU478269 lncRNA upstream 131776 9863033 ~ 9863314 (-) True G403134
TU478299 lncRNA upstream 165639 9896896 ~ 9897124 (-) True G403164
TU478437 lncRNA upstream 203732 9934989 ~ 9952324 (-) True G403262
XM_026942436.2 mRNA downstream 19576 9701804 ~ 9711107 (-) True adnp2b
XM_026942147.2 mRNA downstream 30654 9696064 ~ 9700029 (-) True txnl4a
XM_026942185.2 mRNA downstream 37495 9681913 ~ 9693188 (-) False atp6v1c1b
XM_026942184.2 mRNA downstream 37495 9681913 ~ 9693188 (-) True atp6v1c1b
XM_026942188.2 mRNA downstream 51732 9672774 ~ 9678951 (-) False si:ch211-215i13.3
XM_026942279.2 mRNA upstream 29627 9760884 ~ 9903805 (-) False LOC113543808
XM_034301682.1 mRNA upstream 29627 9760884 ~ 9903805 (-) False LOC113543808
XM_034301681.1 mRNA upstream 29627 9760884 ~ 9903805 (-) False LOC113543808
XM_034301680.1 mRNA upstream 29627 9760884 ~ 9903805 (-) True LOC113543808
XM_026942280.2 mRNA upstream 29627 9760884 ~ 9824452 (-) False LOC113543808
TU477891 other downstream 314476 9387002 ~ 9416207 (-) False triqk
XR_003404456.1 other downstream 353644 9376926 ~ 9377039 (-) True LOC113543915
XR_004577570.1 other downstream 478889 9227395 ~ 9251794 (-) False runx1t1
TU477767 other downstream 569213 9148511 ~ 9161470 (-) False G402673
TU476702 other downstream 2454039 7261340 ~ 7276644 (-) False fndc5b
XR_004577593.1 other upstream 772032 10503289 ~ 10503361 (-) True LOC117596479
XR_003404458.1 other upstream 772536 10503793 ~ 10503874 (-) True LOC113543917
XR_003404460.2 other upstream 772931 10504188 ~ 10504325 (-) True LOC113543919
XR_003404459.1 other upstream 773791 10505048 ~ 10505185 (-) True LOC113543918
trnaa-ugc_19 other upstream 1709407 11440664 ~ 11440735 (-) True trnaa-ugc_19

Expression Profile