RNA id: TU479108


Basic Information

Item Value
RNA id TU479108
length 1924
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G403823
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11211886 ~ 11213838 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTAATCAACTTACGAAGCGAATGTTCATCAGTCTTTTCTTTCACCATATAAAATTACTATAATAAAAGTTTTCTGAGTACCATTCTGCACTACTTacactgtttttatatttttaccttTGTGCCTTATACACAGTCTTTTAGTAATACCGTAATTACAattaaaacatcttttaaaCATTTGGAAGACATAATTATACAATTATCAGCATCTACAGTGTATATCTGTACAAAAGAGGCCTACTAACAGCCTTTGAAAACAGTGTCATAAAATTAACTTGGAccaaaaaaagcatataaatgtacaaaaaaaaaaaaagtgtgcatcaatttgtcatttttaggtTCACTACCAGTTTGCTTGTAACAACAATTTTAACAGTTCACTTTAGACTGAAGATCTGTATTGCATTTAAGCTCATTTCAACTCTGGAGAAGTGCCACGTTGCCGTTTGGCAGCAAggacaaaaaaatgaacacacttGTCAGACAGTGTTGcacaaatatgaaataaaaggaataaCAGTAAAATGCACATTGAGAGAAGACGGTACCCTTGAGTACTAATCCTGAGATTCATACAGATGTACGTGTGCCAAACAGCAGTGGTAAATATAATGTCATTACCTAACATTCTCTGTctactgagttttttttttgtttgttttattgtgggCACCAGTATTTATGTCAGCATTTGTAAGGCAGAGGGTTACAGCATgtgcacaaaaatacacactcctgttctctctctcacacacacacacacgcatgcacacgtTAGGGACTGCATAGAGTAGCTgactaatacattcactagtcACACTGTGAGTATGTCAATTAGTCAGAGAAAACCACATATCACTGATATCACTTCTATGTTTAAGTGTAGAGCTGTGTGCAGGACTATTTCATCCCATTTCACCTTCTGAACAATCCCACCCTGTTATCctttaaatctaattaaaatttAAGCAAAATCTATATCCCACTCAGTTAGTTTAGTCAGTCCAGACTCGTCTTTGAATGTTACCGATGTTGAATGTTCAACACGTGCATCACTGTGAACCTGGAACGCTGCTGTAGACAGAGAGCTCTggtgatggacatgagcttcagTGCTGCAtgctctcagtttcagaatcagcAGTTCAGGTTGGTccttaaatattgtaattggatacagaaatgtattattttactcctgtattgtgctgttttattcattttcattgctAAAAGTATAACCTAAAAAGCTGGAAATTTAATTTATAGCCTGTGTATGGCTGTTCACTGAAGTTCAGTTTAACacattcttctctttttttagcATCTAACCACACTAATAAAATAGCCTGAAACTAAAAAAGATAACTAGTCAATTACTTTTTCTGAATTACTGGTTGACTAGTAAAAATTAATCATCATGCAAGCCctaacacacacaatgcactgATGCCACTGTCACATTTTGTTCATAGTATGTACAAAGATCACAGTGCCATCCTtaccataaataataaaaaattatattgtatatagatTCCAGATTACAAAAAAGGACAGTGTTGCTTCTGTTTGTGCATCACCTAAAGCACAAATAAAGGCTGTTTAGGTGGTACAATCAGCAGACTGGGACCAGGAGCTGTGTGCACCGAGAGGCCAGTCAGAATTCCAGAGCTCTGTGCAGCCCATGCCTGCTGCCGTAAGTCCTAGCACCAACTGAAATGAACTCAGAAGAAATCAAAGAGCCCATGGTAGCGTAGTTCCTAGTGGATTGGCACTGCACACCAATCCTCAATGAACAAAAATGAGATACATCAGTGTCTTGTACAGCTTGTGTTCCATAGCTTCCTTGGCTTCCTTGGATTTCCAGAGCTTCGTACTCTCGCTTCCATGTTCTCTTCTCTCTGGTGGTGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU478957 lncRNA downstream 60707 11150807 ~ 11151179 (-) True G403717
TU478955 lncRNA downstream 72760 11138782 ~ 11139126 (-) True G403715
XR_004577592.1 lncRNA downstream 80698 11120569 ~ 11131188 (-) True LOC117596478
XR_004577535.1 lncRNA downstream 190258 11007620 ~ 11021628 (-) True LOC117596414
XR_003404446.2 lncRNA downstream 704836 10502311 ~ 10507050 (-) True LOC113543816
XR_004577564.1 lncRNA upstream 42953 11256791 ~ 11260391 (-) True LOC117596438
XR_004577563.1 lncRNA upstream 113860 11327698 ~ 11362956 (-) True LOC117596437
TU479143 lncRNA upstream 181899 11395737 ~ 11396040 (-) True G403851
TU479193 lncRNA upstream 317455 11531293 ~ 11533016 (-) True G403893
TU479300 lncRNA upstream 454925 11668763 ~ 11696191 (-) False G403981
XM_026942428.2 mRNA downstream 214890 10991712 ~ 10996996 (-) True stmn1a
XM_026942218.2 mRNA downstream 796168 10412385 ~ 10415718 (-) True cited4a
XM_026942162.2 mRNA downstream 997005 10203813 ~ 10214881 (-) True si:ch211-30b16.2
XM_034301768.1 mRNA downstream 1029120 10121543 ~ 10182766 (-) True LOC113543865
XM_026942287.2 mRNA downstream 1098370 10096124 ~ 10113516 (-) True ube2e1
XM_026942217.2 mRNA upstream 29667 11243505 ~ 11274312 (-) True LOC113543771
XM_034301644.1 mRNA upstream 170355 11384193 ~ 11397339 (-) True LOC113543744
XM_034301801.1 mRNA upstream 205315 11419153 ~ 11430318 (-) True LOC113543901
XM_026942191.2 mRNA upstream 234617 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA upstream 238082 11451920 ~ 11498259 (-) False LOC113543760
XR_003404459.1 other downstream 706701 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 707561 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 708012 10503793 ~ 10503874 (-) True LOC113543917
XR_004577593.1 other downstream 708525 10503289 ~ 10503361 (-) True LOC117596479
TU477891 other downstream 1795679 9387002 ~ 9416207 (-) False triqk
trnaa-ugc_19 other upstream 226826 11440664 ~ 11440735 (-) True trnaa-ugc_19
trnap-ugg_24 other upstream 227677 11441515 ~ 11441586 (-) True trnap-ugg_24
TU479536 other upstream 563531 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 596545 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 598039 11811877 ~ 11811964 (-) True trnay-gua_13

Expression Profile