RNA id: TU479193


Basic Information

Item Value
RNA id TU479193
length 775
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G403893
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11531293 ~ 11533016 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAAGACCCTTTCTAACAGCATGGCCCAGAGTCTTCTCAACTATTTGCCATATTTTGCCAGTATTGTCAACATTGCTCGACTTCGTCCAGCTCAACAACTCAACTCTttaggGTCCCTGGAAGACTAGAGGTTAGGCCATGGCGCTCTCACCACAGTGGCCCGGctttgattcccagccagggaaccgcacacaacagtgcactcccagtgccggtcccaagcctggatgaaattggggagggttgcatcaggaagggcatccagcataaaaactgtgccaaatcaaacatgtggaccaatgatcttctgtggcgacccctaatgggagcagccgaaagaagaagaagaagatatcATCAACTTATATCCGTAAAAtagtaatgttaaaaaaatttttggtcactcaaaagagataattagtatttcaacagaatttaaaatgtatggagttctGAATGAcgttatgaagattaacatttgttgaacagTTGATGTATATGGTGGGGTGCTGTGCCATCTGGCCCTATGGATGAGCCACCACTGGTACTAAAACTTGGTGGTGggggtggctcagtggttaaagtgCTGCATTACTAATCAggaggttgggggttcaagctgccagtgttgggcccttgagcaaggcccttagcCCTCTCTACTCCAGGGGcaccatatcatggctgactgTGCACTCTAACCCCAACTTTCTAAGAaactgggatatgcaaagaagaGAATtttgctgtactgtaatgtacatatatgtgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479143 lncRNA downstream 135253 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 168337 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 270902 11256791 ~ 11260391 (-) True LOC117596438
TU479108 lncRNA downstream 317455 11211886 ~ 11213838 (-) False G403823
TU479111 lncRNA downstream 317455 11211886 ~ 11213838 (-) True G403823
TU479300 lncRNA upstream 135747 11668763 ~ 11696191 (-) False G403981
TU479299 lncRNA upstream 138651 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA upstream 146239 11679255 ~ 11680996 (-) True G403982
TU479297 lncRNA upstream 158688 11691704 ~ 11696191 (-) False G403981
TU479385 lncRNA upstream 230095 11763111 ~ 11765767 (-) True G404060
XM_026942089.2 mRNA downstream 2257 11525516 ~ 11529036 (-) True LOC113543691
XM_026942158.2 mRNA downstream 7950 11517930 ~ 11523343 (-) True LOC113543737
XM_026942191.2 mRNA downstream 33034 11448455 ~ 11498259 (-) True LOC113543760
XM_026942193.2 mRNA downstream 33034 11451920 ~ 11498259 (-) False LOC113543760
XM_026942192.2 mRNA downstream 33145 11451920 ~ 11498148 (-) False LOC113543760
XM_026942160.2 mRNA upstream 8428 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA upstream 8428 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_034301721.1 mRNA upstream 190561 11723577 ~ 11732473 (-) True LOC117596452
XM_026942200.2 mRNA upstream 245011 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA upstream 245011 11778027 ~ 11789928 (-) False si:ch73-347e22.4
trnap-ugg_24 other downstream 89707 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 90558 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1026108 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1026968 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1027419 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 244353 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 277367 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 278861 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 280352 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 281869 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile