RNA id: TU479303


Basic Information

Item Value
RNA id TU479303
length 1680
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G403982
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11679255 ~ 11680996 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCGCGCGCGCGCTTCTCTTCCTCGACTTGCCTCTGTAAAATCTCGGCCCTTTCTTCTGCCTCGTCGGCTTGCTGCTGCAGAACTTTAATCTTTCTCTTCACCGCGTCGATGCTGTTCGTTCCGGCCATTTTAAAgctgttctctttctcttttGAGTGATGAGAGTGGTGGGGAGGACTGGGGGAACAAACCAACGCCCCGCCAACGAGTCAACTTGTAGCGCAACGTGTAGCACAACTTGTAGCTGAAGTTGTAGAGACGACAGGACGAGACGAGACCTTTTTCAGCTTgcagcacctttttttttttgcaattgcTGTAAATGCTCAAGCCTGAAAGATAGTGTTCGAACTGCCTTTTGGATGGATCCTGAGCAGGAAGcgcagaaagtttttttttttttcttctcagtagGACGTGGCAAGTTATCCAAATTCACAGGCTTCCGCTTGTCTGGTCTCCACGCCTGGTTTTCCCCCAATTTCTTCcaatttatatatgttttaaagtTAGCAGCGACAgaatctcatctcatctcatctcatctcacctCCCCTCCCCTTAAATCTGTCTTCcctgcacacttttttttccttttctctttttttcaactCACTTCCGGTTCGCTCCACCCAGCCCAAGTCAGACCGTTGAGCACTCCCCTTTCTGATCCTGGATCAGATGTCAGGCGCGCGCAGTGAAAGCTGATTGGCCACACTGCGAATCACACGTGTCCAGGTAAATGACGTCATAAGGGTCATGTCGGCATTCCAGACCGCTCCTTAGCTAAGGTGTGGTGTAGTTGCACGCGACGCCAAGGTTATACAGGATTCATTTAGAACCTGGCTAGAGCTTTTTGGTCTTACTTTACCCTCTTTACTAACCATCAACACCACCTaaaaacttcacacactcagtTTACACTCAGAACCGgaagtgttgcacagcattcCTTTTGTTAAAATCATATTTGCTTTaagtgtgtgtcatcagcattaaAAACACTACAGCTGAACATTGcatcactgtctttctctcttgcaAAATGAAACAGGATGCTGAAACATACTGACACACTCATAGGTAGGATAGTTAGCACCTGCAACAGTCTTCCAGCGCTTTAAGACCCACCCTGACTATGTGTCACTCCTGCAACATGCTTCCTGCTAAATCCAGGGTGTTGGGAGTACACAGTTACCATGGAGGAAACAAATCTGAATGATTAAACCTAGATTTATAACCTCAGTTGTGTTCATGTTGTTGTTCAATTCTTCTACCAGTACGTCAAACGTTCACGTCGCAGGTGGACAAATCAAAAACCACACTTGCTATCCCCCCGGTTAAGTAAAATCTCCATGTACACGACCATTATCCTTTTCTCACAAAGTTTCTGTTGTGCCATCATGTTTGCGCCCTCGTGAAGTCAGAGTCGTCGGCCCGCGTCTCAGCTGCGCTGTGGTCTTGCATCACATGTAAAACATATACAAGTCTGGCAAACTTGTAAGTAAGAGGTGACTTACTTATAGCAGGAGAGTTACATGACAGCTTTTGCTTGGTTTCGTCATAGTTGTCACATACCTGCATATTCCTGATTGTCTGTCATCCGTGCACAGTATACAcgatatgaccaaaagtatgtggacgcctgattatcacactcatatgtcttccttcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479193 lncRNA downstream 146239 11531293 ~ 11533016 (-) True G403893
TU479143 lncRNA downstream 283215 11395737 ~ 11396040 (-) True G403851
XR_004577563.1 lncRNA downstream 316299 11327698 ~ 11362956 (-) True LOC117596437
XR_004577564.1 lncRNA downstream 418864 11256791 ~ 11260391 (-) True LOC117596438
TU479111 lncRNA downstream 465417 11211886 ~ 11213838 (-) True G403823
TU479297 lncRNA upstream 10708 11691704 ~ 11696191 (-) False G403981
TU479385 lncRNA upstream 82115 11763111 ~ 11765767 (-) True G404060
TU479539 lncRNA upstream 108323 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479573 lncRNA upstream 140054 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 289746 11970742 ~ 11970964 (-) True G404235
XM_026942160.2 mRNA downstream 127076 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA downstream 127080 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_026942089.2 mRNA downstream 150219 11525516 ~ 11529036 (-) True LOC113543691
XM_026942158.2 mRNA downstream 155912 11517930 ~ 11523343 (-) True LOC113543737
XM_026942197.2 mRNA downstream 197930 11451920 ~ 11481325 (-) False LOC113543760
XM_034301721.1 mRNA upstream 42581 11723577 ~ 11732473 (-) True LOC117596452
XM_026942200.2 mRNA upstream 97031 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA upstream 97031 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942199.2 mRNA upstream 97031 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942107.2 mRNA upstream 111224 11792220 ~ 11794417 (-) True apoea
trnap-ugg_24 other downstream 237669 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 238520 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1174070 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1174930 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1175381 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 96373 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 129387 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 130881 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 132372 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 133889 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile