RNA id: TU479385


Basic Information

Item Value
RNA id TU479385
length 2657
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G404060
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11763111 ~ 11765767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTTTTAAGGATCTACAGaaaggtgacaaattaaagtggaaaaaaaaaagtataaagtgtCTTAGCAAGGTTTTGGGCCaccatatttataaaaaaaaaaaaaaaaacaattcctatttaatatatacaaaCAGAATGTAAAGATATGCACAAGACcatctacacacagacacaatgaATTACTACACTATACCATAAACCCATTATTTTTCCAACTCAGCACTTTCAGCACACCTGAGTGTATTAAATGAAGATTCATCTTAAAACCAAAGTCTGTAACATTGCATTTTTGTACAAATCCCAACTAGGAACACTTCAGCGTATTGCATAAACCCACAGGCAGTACTTATAACACCGTttttgaaattaaaagaaataaaatatagataaataaatagtcatTTTCCAGGCTTGTATCCTAAAGTGGCTTTTTTGTTGCCACACTAAACTCTGAGATTATTTACTGCAAATCACATATGGCCATGACTGAATTCCAATTCTACAATACTTTCTCTTCCCCATAAATCTTATTTTAGATAATTACATCTTTATGAACAAtcaaatatgaatatgtaaGGCACTGTTAAAATATGTAAACTATTCAGAGCGAGTGCAATTCTTTGTGCAAAAAAACAGTCACATGATGGCTAAGAAAGGCTCTTAAAAATCAaattttgtcaaaataaaaaccaatatgtaccccccccaaaaaaacaaatgttgacATTGTATTTTAAGACTGGAAAATTACAAAAGAGTACAATTCATATAAAATCAGACAGCACCGCTTTGATAAACATTTCACAAGGCTTACTAAGATAACAATAAGACAAAGGTGAAACGAATCGGTGTCCTCTCAAATCATCATTGCGTATTTATCAGAACATCAGGCCTCACTGATCAATCTTTCAGCAAagttatgtgtaaatgtttgcgtaagccaaaccGAACTAGACTTGTCTggcagatttacaaaagttttgatCACCTGTAAACTGCAGGACGAGTTCCtcacacagctcatttgcatttagcgaCAACCACAAACTCTATAAAAGGTCAAATGCACAGACAGCTGAGAGCATGAAATGTATGATCAGGGTAAAGGTTGAAAGACAGAAGCTGacgttattttgactcacttctatgccaataaaactatttaataatatataatattaataataatgagcaatgctaaatcttccatcagctgagacatttgtaaatgtcaataaaataaaacatctggtTTTCACTAAATGTTCTTGATGTTcttattcttagtccctgacttagtgaactagcatgaggatgtgtttttgactcCAAAGCCcttctataagtcgctctggataagggcgtctgcaaaacgctgtaaacgtaataaaaacaAGCAATTTAACCtcgacagtatattccagatataaaaatgcagtaatgaTATGATCTTAAGGCGATCAAGtagaggtttatattagttagtcttcttctgagtaaatatacacacactcagaagcatgagtaggatacaaaCTTTGTTTCTGAAATTACGGGAATTTCATGAACACCAAAATTCTTGTTTAACGGCTCGTAATAACAATTTACGGACAAATCCATTCATACcgagattgataaatgaggcccgtTGTACCAGATTTTACAACACccataatattttcatttgccTATTGAACTACACCTAACTTGAGATAGCTTTTTAGAAGAAAATACatgtaatgtaaattaattaatgcaaaCATAATTCATGTAGCGCACACCCCATTTTGATCAATTAACATAGTCAGAAAGCTTTATTATTTGTATGCAATTATCTCAAAGCTGAAGCAGAATGTAAGCAAAGGAATATTTCTGAAGGCGTAAGCTctgttaatgagaataatagCTAAATAGTTTAGTAAACATGCACATTTCATCTGGCAAGCATTGGAATAATATACTGATAGGTTAAAGTATTGTGTATGTCATGTAATATTTCTATACCATAACTATTTTCCAACACTAACTCTGAGTTTTCTGGTTAAGATTAAATAAGATCTGCTCTAGGGCTGgataatatgatgatataatatcgcTATCGATATAAATTATGTCTCAATACATTTACCTTTGCTTGTATTTTACTGATTTAAAGCAGCTGATTAGATGTTACAGTTTTGTCCTGGATCttcaaaactgtaaaatgttacaattttgaacaaatgtttcatttttttcctctttttcactattaatttatttttgctgatgttaaataaaagcatcaatgaactcagttttttttaacacagctACTATTTTGTGAGCAGTTTGTTATCTCGTTGTACTTACTGTGTATCAGAAACCGTGATGATATTTTTCGCCCCACTCTGCTTTCCACTTCCCTTAATACTGAGCCTCTCCAGAACATTTTCTTAGCGAGCTTACTAAATATTGTTCACATTGGCAAAGGTACGTTGCCTTTTTCATAGTTAAAACAGGTCTGAATTTCCAGTTTCAGCAAatttaaaacatcatttaatacTAAATACTCAAAAACCCCTATAAAATCCTCCATTATCGCCTCCACTAGTGGAACTGTTAAATCGCAGCTGTCCGTTTCCCTCTCCTTTTTCCTAGCAAGGGAACCTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479300 lncRNA downstream 66920 11668763 ~ 11696191 (-) False G403981
TU479297 lncRNA downstream 66920 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 74738 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA downstream 82115 11679255 ~ 11680996 (-) True G403982
TU479193 lncRNA downstream 230095 11531293 ~ 11533016 (-) True G403893
TU479539 lncRNA upstream 23552 11789319 ~ 11790165 (-) False si:ch73-347e22.4
TU479573 lncRNA upstream 55283 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 204975 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 231303 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 234499 12000266 ~ 12000510 (-) True G404243
XM_034301721.1 mRNA downstream 30638 11723577 ~ 11732473 (-) True LOC117596452
XM_026942160.2 mRNA downstream 210932 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA downstream 210936 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_026942089.2 mRNA downstream 234075 11525516 ~ 11529036 (-) True LOC113543691
XM_026942158.2 mRNA downstream 239768 11517930 ~ 11523343 (-) True LOC113543737
XM_026942200.2 mRNA upstream 12260 11778027 ~ 11790179 (-) True si:ch73-347e22.4
XM_034301565.1 mRNA upstream 12260 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942199.2 mRNA upstream 12260 11778027 ~ 11789928 (-) False si:ch73-347e22.4
XM_026942107.2 mRNA upstream 26453 11792220 ~ 11794417 (-) True apoea
XM_034301427.1 mRNA upstream 33729 11799496 ~ 11809781 (-) False LOC113543858
trnap-ugg_24 other downstream 321525 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 322376 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1257926 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1258786 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1259237 10503793 ~ 10503874 (-) True LOC113543917
TU479536 other upstream 11602 11777369 ~ 11779203 (-) False si:ch73-347e22.4
trnay-gua_12 other upstream 44616 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 46110 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 47601 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 49118 11814885 ~ 11814972 (-) True trnay-gua_15

Expression Profile