RNA id: XM_026942200.2


Basic Information

Item Value
RNA id XM_026942200.2
length 6427
RNA type mRNA
GC content 0.41
exon number 5
gene id si:ch73-347e22.4
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 11777369 ~ 11790179 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caagtgacgtcaaagcaacatggctgctcatAGCATGaccagtaaacaaagtagcacctTTTACTTTTACCTTTACCTTTTGACTTAGGTCGAAAATGACGTCATTCTCACATCCCCTTTCTGAGATGGAAAAAAGTGTTAAGCCATACCTACCAGAGTGCTAAAAAAATGGATGGCAAATTCCCATCGTGGACTGACAATGGCGAGCATAGCCATGGAGTAGCAGATGCAACACCATGGGGATGTCAAGCATTGGATAATACTAATGATATTTCCTCTCAGTGTGGAAAAGTCATCACTGAGGGGAATTATGGGGAAAGATGGGATGGAGACTTCCCTAAAGCTTGTCCACAATCGCTACAGTGCAAGGTGTCCATGAAAGAAGGACCAGTTGCAAGGATGCAAGGAATCCTGCCTGAAgttgcatcatcatcatcatcaacgtACACACATAATGCCTCAATAGCTTTTTCTGCAGATTGCCAGGAAATTCCATCTGGAATAACACCCGAAATAAAGTATTCCAATTGTCCAGTCTACCAGCATCCCAGCACAGAAAACCTGAGAGCCGTTCCAGAGGATTATATAGAAAGAATAGAATCAATGACAAGCAGCACTTCTGTGAATGACCAGTTAGCTGCTGCGCAACAAAAGGTCTTGAAAAGATTCAACCCTTCCATCTGGACGGCTGTGATCAAAGAGGCTTTAGAGATGCGTAATGGGATGGAATTGGAGCGGAATCTGTTAGCAGACATGTCTGGAACCCCACTGATTTATGATCCTCCAACCGAGTCAAGAGCAGTGGAATTTGTAAAGAACCATTTTGATCCTGTAGATAATGAGTCAAATGTCCAGGAAAGCAGAGAAGTGACTAAAGCACAAGAGCCAACTGATGTTATTTTATCAGATGACACTAAGAGGTCTCCCTTTAAGCCAAATCAAGATTTCCAACAGAGGacAGTTACTGAATACATGGATCCCCCAAATGATGAGTCGTCACCGAATGGCAAGGTACTCGGTGAGACCAGTTGCAGGATACTTAAGCGGTGCTCATCAGTGGGATTTTATGATGCCACTGAGGTTTGCTCTCTAGCGCAGAGTAAAACTACAGAGGAGAAAGAGGTTTCATATTTTACCAAAAGACCCTGTTTGTCAGATGAGTTAGGTCCAGGCAGATCTAACATGCACGAGCAGTCCACAAATTTAAAAGAACACATGTCCTGTGGGAATGAAGAGGGTGTATCAGTGTTGAGACAAGCTCTTCAACATAGTTCTCACAGAATATCCAAAGAATGTGCACAGTCTTGTAAAAATGTCAGCAATTGGAAATGTATGGATAGCCAAACTAAGAGCTGTACAGACAATAATGCAACTCTCCACAGACATTTAAGCATACCTAGTCATCATTTGAAGTTTGACACTATTTCTGCTGAGCCAAGTCTTGTATATTCATCTACCTCTGACCGTAAACAAGATAACCTTGTACATAACCTTCAAAAAGGGAATCCTCCAACTCCAACACTCAGCTCTATGGAGCATTTTCAAAAGCCAATGGAAGTTTCAAGGACTTGGATAGAGAGTGAAGAGTCTAATCTACCATCTAAAAAAGAGGAATCCACCAATAACAAATCAAATGCTAAGTGCACACCAAGAGAACCAGACGTACTAACCATTGCTGCTCACAGTTCTTGGAAAgtgttgagaaaaaaagaagatggaAGGGCACATATGTTGGATGACACACCTACCTGTAGTCAAAGTCATTCTTCATGTGAGCTCTTATCATCAGATACAAACAATACCTCACTGTTGATTAACACTGGCAAGGAGACAGATAATGGCCAAGTAATTACTCAGAATATTATGAATGTTGGAGAGGTCAGTGATGATACTACTGCTCGTTATAATTCTCAGGGGCAATCACAGTCTTTGACTGTTAGCTCAAACCCTGAGACAGGAGTGAACAGTGTTTTCAGCTTAGAGAACACAAGTAAAGAGAGAAAGTCTGAAGTAAACATTGGGAGTCCACAAACACCCACTGATTTCCTCGAGAAAGAAACAGCCCAAGTAGAACCCTACAAAGACCATTCCACTCACTTCGCAGCACATGAATGTAAAATCGATCCCGATTCTAAGTCTTCCTGTGTTAACCTCAGTAGCGTCAGTACTCCTGTTACAATGAAAAAAAGGGTAGGGCGCTCCTTTAAAAAGAGAAAGCTACTGAAAATGGCCAAAGTGTTTTCAACAATTCAGGAACCTTCCAAAAACGTAACTGCTCATTCTGGGAAATTTTCTAGAGATTTgaaaaagttaaaaacaaaGGCAGAAAAAATGCACTCCCCACCCACATACAGAAGAAAATCACGCTGTACTGCCATCACtatacataaagaaaaaaaacttttacgaAACAGTCATGTAGAAATAAAAGAGGATAGACATCCAGGTTTAGTTACTGACTGTGGACAGAATCGGTGTGTGAAGTCAAGTAAATTGTCCAGATATCACATTGGCCAGGTATTCAAGGTGTCTTCAGGTCCACAACCAAATAATTTTCAGAAGGGGTCAAGCACAACCAACAGATTACTGGATTGTTTTGAAGACCCATTAGAGACTGAAATACACAATGTGAACCATGACAGCATGTATCAAATCAATGTAAAGGATTTCCATTCAAATACTAGTAATACACTACTGAAAACGCCTTCTGAGTCACAAAACAAAGATGCAAACTTGACAGAAAGCAGAAAACAAACGTGGAATAAAAGGAACAAAGAGAAAGCTCACAGCACTGAGCTAAATGGTGATGCAGCTTTTGAGTTGTCTCTGCAGTCCACTATTAATAGTACAGGATTCCATTCCTGCATTACCAATGCATTTTACAAAAAGGTAAAGGACGAAAGGTCAAGAAATCTCTTAATGGGTGTAAGTGTGAGGACATCTGATCAACATCTGGGGGAATTATCTGAACAGGATGTTGGTGATGATAATGCTCTATGTGAATCAAATGCAATTTCACTTAAACATTCTCCAATTCAGAAAGTAGACAGATTTACACAGTATTGTGATGAGGACTACATGATCACACTAAATAAGGACGCATGTACAGTAGCTGATGCTGTTAAGAGTACAAAAGTAGCAAAGAAATATATCAATTGTAAGTACTGTCGTCGATCCTTCCGCCATATCTCTGCATATACCGTTCATCAGCGTATTCATACAGGTGAAAAACCTTACAGGTGCGATCACTGTGGCAAGAACTTTGCTCAGCTGTCCAAACTCAAATCCCATAGAAATGTCCATGTCCAGTCTTTGCCATGCCCATGCTGCAGAAAAAaattctcagaaaaaagggaTTTGATAGCTCATTTTATGACCCACATGAAGGACACCAAGCAAAATAATGAGCCAGGTCAACAAGACAGCAAACCCGATGCCCCATTTAAGGATGCTACACGTAGAAAGAGTGTAATTAGCAACATTTATAACAACAAATTTCCTAAGGGATATATGCGGGAATTTCGTAAACATGACCAGGTTAAGTTTATGTCCTGTAAGACCTGTGGAAAAGAATTTTGGACATCTTCACAGCTAGCAGTCCATGAGAAGACCCACTGGCCAGTTAAACCTTATGCTTGCTCCATTTGCGCCAAAAGTTTTAATCAGGTCAAGGCTCTGAAAAAGCATTCTCAAAAACACACAGGGGAGATGCCTTTCTCCTGTTTTCATTGTGGTTGTGCATTCTGTGATCTTCCTGCACTGCGGGTGCATCAAATATCCAAACAATGCAATCATAAGCGTAGCTTAAATGGAGAGAATTGTGATATCGAGGGCTTTCTAGTCACTCATGGAGTTGATGGTCAAGTAAATACACCAATGTTCTTCAAGTGCCAAATATGCAAACAACTCTATCAGAAGTGGTGTCAATATACTCTACACCTTCAAACCCACACAAAGTATCCGCCCTATCTTTGCTTTGCTTGTGGGCAGAGCTATGGAAAGGATTCTGAAGTCAGTGTTCATTGTAGGGTATGTTGTCAGACAAGTGGGGAGGAGGTGGCTTGTGGTTCCTCACTTTCTGAAATCCTGCATAGTAACTCCAGAAAATGCACTTACTTGAAGGATAGGTCAGCAGCTGACATGGATTCTGTAGAGGCTTCCAAAAGCAGTTCTCTGTCAAGTGCTAGCCAGTTTCAGAATTCCCCAACTTGGAGTAATCTGCAGACAGAACAACTTATGCCTGAGTCCTCTAAGTTTGTAAAGGCTTCACATTTGCCTGAAACTGTGCATCTTTCTAATGACGATCAGTTACCCCCATCACCCACAGCTTCTGTGATGACACGTGCTTCCTTGAACGAGCCTCTGGAATCTGTTGAAATATCACCAAGTCTCTGGAGATTTAAGTGCCCACGCTGTGGTCAGAGGTACAAGCGATACAGGACTTTGTGCCTTCACATGCAGATACATGCCCCTGCTTTTAGGTATGTTTGTGGACGTTGTGGTCACTCCTTTGAAAGGTGGAACAAACTCTGGTTGCACCAGCGGATTCATCATCGGAAAGGCCATTGCTATACTTGTTCACAGTGCAACCTCCAATTTTACTTCTTTAGCTCATATAAAATGCACCTGCTGAACCATGCTGAGGAAAGACCCTACGCTTGTCCCCTTTGCCCTCAAACCTTTTCCCATGAAGAAGGCTTGCATGTTCACCAGTGCAATTTTCACCAACCAGAAAGAAAATTACAGTGCAGTGTTTGTGCCAGGAGCTTTAGTAATTTGACAAACTTGGTTAAGCACAGTCTCCTTCACAATGGTGCCATTTCTCACCAGTGCCTTCCATGCAATCTCTCCTTTGCAAATAACAAAAGCCTACAGGAACATTTAAATACTCATAATAATTCTGCCAGCCTCCTCCCGTCCATCCCATCTGAGCCCTTAACATTTCTACACAAATGCAATAGATGTAAGAGCAGCTTCTCAACCGGGGATCTACTCTATGCTCATCAGATATGCCATACTGGAGATTTAAAGAGTCAAGTGCATTCTACCCAAAGCAGTGAATCTACCTCAGTTGGCCTCGGAAGCACACGGTCTTCTACTAGCAGATCTCTGCTATCAACCCTTGACCTTGATGCCATTCCAAAGGAGAGCCTTTTTAAATACCCCCACCCAGATAAGCTCTACGTGCAACCTCGTCTTTCAAGAATGTCAAAAAGTATCCCAATCATTAATCTAGATTTGGGTGATGAGGAACTCCCACGGGAAGCCAGCACTGACCATGTTTGTCCAAACAGTAGAACTGGACCTTCTGGACCAAAAATTCTTGAGGgttctcaagaatattctgtaACTGATATGACGCACCAACCTCAGGCTTTGGAAAGCCAAGAATCTGTTCAGTCTCAGAATACTGAAGCGATTCCAGTGCTTTACACGGACACAGTAACTGATAACCACCAGGACAAAGCTGGTCACGATGCTGAAATGAGTGTAATCTTGGAGGGACCAACCACCACTGTGAAAGCTGCTGAAAATGAAATACAGGACGAGATATTTGAATGTGCAGACTGCTCTGAAAAGTTAGGCAGTCTTATAGGATTATACGAACATTATTTTCTACATGCATTAGGGAATACAGGCCATTACAGATTTCTCTGAAAGAGGATAACTCTTTCAAGTCATACATCAACTTTAATGAAGAATTGGAACAAGCAGCCTGGACAGTCTTGcaaaaaaaggtttcatttttttttttaaatagttgcaGTATtatgaaaaatggaaagaatgtgAATGTTAACAGTATGTTACACAGGTGCTCCACACACCAAGAAAGTCATGTAATATCATTGCAAAaggctattttattttttactcatcAGACACAGAACAGTTACAAATACAGGAAAAGTGTTTCCCCTTGCTGCTTCTGTGCCTTATTTTCATAAGGTCAGTTTTAACACCCTGAATTTGTGCCTTCTCATAATGTGGTAACCTTTATTGTTGGCATTTATGGCAATGCAAGTCATGAAGTGATCAGATTGTTTACAAACTGGTGTACATCTTGTCATCCTGTCATGCCAGAACTGTTATGCTCTACAGTGATATGTAGACCTGCACTGGAAAtcttattagaaaaaaaaaaaaaaatgctacctTGTATttgatagctttttttttttttgaatgcatTATGTGGTTGAATACtgtatcagtaaaaaaaagaccatgtctgtttaaagataaatgaatggaaGCTAACTGGTTCATTTATGGTGCatacatttcatcatttcatgaGCATTTTGTTGAAAAACTTTTAAAGTAGAGCCTTTTACACTGAGcctttaaaaaatctttaataaaactACTTAAACTAAGCACTGTGTGGCTGTGTTAAATcaacaggaaagaaaaacagcaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479385 lncRNA downstream 12260 11763111 ~ 11765767 (-) True G404060
TU479300 lncRNA downstream 81836 11668763 ~ 11696191 (-) False G403981
TU479297 lncRNA downstream 81836 11691704 ~ 11696191 (-) False G403981
TU479299 lncRNA downstream 89654 11671667 ~ 11688373 (-) True G403981
TU479303 lncRNA downstream 97031 11679255 ~ 11680996 (-) True G403982
TU479573 lncRNA upstream 30871 11821050 ~ 11821426 (-) True G404198
TU479616 lncRNA upstream 180563 11970742 ~ 11970964 (-) True G404235
TU479622 lncRNA upstream 206891 11997070 ~ 11997470 (-) True G404241
TU479624 lncRNA upstream 210087 12000266 ~ 12000510 (-) True G404243
TU479664 lncRNA upstream 335278 12125457 ~ 12125840 (-) True G404282
XM_034301721.1 mRNA downstream 45554 11723577 ~ 11732473 (-) True LOC117596452
XM_026942160.2 mRNA downstream 225848 11541444 ~ 11552179 (-) True si:ch73-109i22.2
XM_026942161.2 mRNA downstream 225852 11541444 ~ 11552175 (-) False si:ch73-109i22.2
XM_026942089.2 mRNA downstream 248991 11525516 ~ 11529036 (-) True LOC113543691
XM_026942158.2 mRNA downstream 254684 11517930 ~ 11523343 (-) True LOC113543737
XM_026942107.2 mRNA upstream 2041 11792220 ~ 11794417 (-) True apoea
XM_034301427.1 mRNA upstream 9317 11799496 ~ 11809781 (-) False LOC113543858
XM_026942360.2 mRNA upstream 9317 11799496 ~ 11800738 (-) True LOC113543858
XM_026942361.2 mRNA upstream 9317 11799496 ~ 11800727 (-) False LOC113543858
XM_026928288.2 mRNA upstream 42027 11832206 ~ 11842945 (-) True tomm40l
trnap-ugg_24 other downstream 336441 11441515 ~ 11441586 (-) True trnap-ugg_24
trnaa-ugc_19 other downstream 337292 11440664 ~ 11440735 (-) True trnaa-ugc_19
XR_003404459.1 other downstream 1272842 10505048 ~ 10505185 (-) True LOC113543918
XR_003404460.2 other downstream 1273702 10504188 ~ 10504325 (-) True LOC113543919
XR_003404458.1 other downstream 1274153 10503793 ~ 10503874 (-) True LOC113543917
trnay-gua_12 other upstream 20204 11810383 ~ 11810470 (-) True trnay-gua_12
trnay-gua_13 other upstream 21698 11811877 ~ 11811964 (-) True trnay-gua_13
trnay-gua_14 other upstream 23189 11813368 ~ 11813455 (-) True trnay-gua_14
trnay-gua_15 other upstream 24706 11814885 ~ 11814972 (-) True trnay-gua_15
trnay-gua_16 other upstream 26204 11816383 ~ 11816470 (-) True trnay-gua_16

Expression Profile