RNA id: XM_034301705.1


Basic Information

Item Value
RNA id XM_034301705.1
length 5088
RNA type mRNA
GC content 0.51
exon number 16
gene id grin2da
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12145598 ~ 12256372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagagagaggttgctAGGTGACGGGGCGTATATActgaattttaacaaaataactagggagagagagagagagagagagagagagtcagcaaCATGTAGGCAGGCTGAGTAAAGAGAGCTCGAGACTGTATATGTAGCCTACGGTATTGAACGTAGACTTGACCGGGGAGAAGGAGGGGGGCGGAAAAAAACCCTCGTGAAAATGGACGACAGAGGAACGAACGCGCAGCGGACCGGAATCCGCGCGAGGGACACAGTCTCCAGATCCTAACACAGCTGAAATATCACGAGTCAGTCTCGAGTCTGTCCCAAGGACAACACAAGTCTGAGTCCCTAACTCCAGTCCCCGTCTCTGGCCTCTGGAGTGGAGTGATATGTTGTCTACCTGAACCAGTCCTCACCATCTACCACACCACATCATGGTGGTGCAGCCTGCTATCTCACTCTTATTGGCCGTGCTGGCGTGCAGCGGGCCGGCCTGGTCGTCCCCTCCGCTACTGCTCCGCCCCCGGGAGCGAGAGAGGGACTCGGGCGGGGCTTCGGGCGGAGTCAACATTGCCGTGGTCCACTCGGGCTCCTCCCACCTCCCGGAGACGAGTGTAGGGGTAGGGGGCACCTTGGCGGCAGGTGCAGGCACAGCAACAGGAACAGGAGTGGGCACAGGCTGGTCGGGGCAGGTGGGCGAGAGTGTGATGACACCATGGGGCCCAGCCAATGTCATCTGGCTGGCAGTAAACGAGAGCAGCCCAGGGAGcctgctgctgcagctgtgcGAGCTGCTGGCCAGCACACCACTGCAAGGACTTGTGTTCGAGCAGGAGAAGCCGCCACCGCCTGAGCGTGCCCCACTGGCACCTGTGCTTGAGTTTGTCTCAGCACAAACCGGTGTGCCCATCATGGCCGTGGGAGGTGGAGCTGGGCTGGGCAGAGAGCCACAGGAGAGCGGCTCAGTCTACCTGCAGTTCTCATGTTCCACGGCACTACAGCTGGAGGTGATCTTTGAGGTACTGGAAGAGTTCGACTGGACATCTTTCTCAGTGGTCACCACTCGCCACCATGGTTATGAGGACTTCCTGGACATGGTGGAGGGTATCACAGATGGCTCGTTTATTGGCTGGGAGAGAAAGAGCACGGTGATGCTTAACCTTACTGATGATCCAGGAGGGGCAAGAACCCGCAGGCTGCTAAAAGAGAATGAGGCACAgGTGCGGCTCCTGTACTGCTCGCATGAAGAGGCAGAGCAGATTTTTAGGGCAGCATGGCTCTCAGGCCAGGCTACTCCTTCACACATGTGGTTTGCTGTGGGCCCAGCCCTTTCCGGACTTGGAGTGGAAGGTCTGCCTAAGGCTTTGTTTACTGTGCGGCCTCAGGGATGGCGAGATGAGCCACGCCGTCGCATTGCTAAAGGCGTGTCTGTTCTGACGCATGGAGCCATGGCACTAAGAAGAGAGTATGGTGGAGCCAGAGGGACAAGCTTTGCCGGGAACTGCATGACTGATGGCAACCAGACTCAGAGGGTGCCTGACAGAATCAGaTACTTCAGTAACATCACTCTGTCGGGACGAGACTACTCCTTTAATGATGATGGCTATTTAGCCAATCCACTAGTGGATGTTATCTCCTACACTGCAGGTCGGGGCTGGGAGGAGGTGGGCTGGTGGGAGAATGGCGTACTGCGTCTGCGCTACCCGCCTTGGTCGCGTTATGGTCCATTCCTCAAACCACTGGATGACAGTCAACACCTGCGTGTGGTCACTCTGGAGGAGAGGCCCTTTGTCATCGTAGAGCCAGCCGACCCTGGAACTGGCTCATGTATTCGTGACTCTGTGCCATGCCGTCTACCCCTCAACAGCAGCGTGGTCTTGGAAGGCATACACTCCATGAAGCATTGCTGCAAAGGTTTCTGCATTGATGTCCTCAAACGACTGGCCAAAATTGTAGGTTTCACCTATGACCTCTACCTGGTGACAAATGGCAGGCATGGGAAGAACATAGACGGAGAGTGGAACGGGATGGTTGGGGAGGTGGTGTCCAAACGAGCAGATATGGCCATAGGCTCACTAACCATCAATGAAGAgaggtcagaagttgttgaattctcagttcctTTTGTAGAGACTGGCATCAGCGTTATGGTCTCTCGGAGCAACGGCACCGTCTCTCCATCTGCTTTCTTGGAGCCTTACAGTCCTGCAGTATGGGTGATGATGTTCGTCATGTGCCTGTCTGTGGTGGCCGTAACCGTTTTTATCTTTGAGTTTTTCAGCCCTGTTGGATACAACCGAAGTCTACAAAGTGGAAAGAGGGCAGGAGGATCTAAGTTTACCATAGGAAAATCTGTGTGGCTGCTGTGGGCTCTGGTCTTTAATAACTCAGTTCCTGTAGAAAACCCTAGAGGAACCACAAGTAAGATCATGGTGCTGGTTTGGGCTTTCTTCGCTGTCATCTTTTTGGCAAGCTACACTGCAAACCTGGCTGCTTTCATGATCCAAGAGGAGTACATAGACACAGTGTCTGGCCTCAGTGACAAGAAGTTCCAGCAGCCCACAGAGCAGTACCCTCCCCTTCGCTTTGGCACCGTCCCAAATGGCAGCACAGAAGAGAACATTCGCAGCAACTACCCAAACATGCATCAATTTATGGTGCGCAACAACCAGAGAGGAGTAGAGGAGGCCATTGACAACCTTAAGACTGGCAAACTGGATGCCTTTATCTATGATGCGGCTGTTCTAAACTACATGGCACGAAAAGATGAGGGTTGTAAAGTGATGACCATTGGTTCAGGGAAGGTATTTGCCACTACAGGATATGGCATCGCCCTGCACAAGAACTCACGCTGGAAGCGACCTCTAGACCTTGCTTTGCTGCAACTGGTGGGAGATGATGAAATTGACATGCTTGAACGCCTCTGGCTCTCTGGGATTTGTCATAATGATAAGATTGAAGTGATGAGTTCCAAGCTTGACATAGATAACATGGCAGGAGTCTTCTACATGCTACTGGTGGCAATGGGTCTAAGCCTTTTGGTCTTTGCCTGGGAACACCTGGTTTACTGGAAGCTCCGCCATTGCTTGGGTCGTTCAAAGGGATTAGACTTCCTGTTGGCTTTTAGTCGGGGAATGTACAGCTGCTGCAGTTTTGAAGATGAAACAACCCCTGTAGGTAACCAAACGACACTTCCACAATACCATCCCATCTCCACAATGCCCCCTCCTGCTCCGCCTCACATGGTCACTGCAAATGTAGCCAACTCTTCCATCACGACGgcacaacagcaacagcagcaaaaaCTTCACCAGCAACAGCAACAGCCAGTGTACAATGCACTTCTTCCTGGATCTCTGCCAACATCTGGGCATTCAGGCATGGCTCTTGGGCCTTCAAACAGCCCAATTCTTGGAGCACCCATGCCATGCTCCACATTTTTACCTCGTCATGATCGACGACTGGCTGTGGTGGATCGGTGGGCACGTCCAAAAACTGGCCCTGAAAAGACAAGTGCCATCAATAGTGGGATCACAGACGTTGCACAATTTCCACAGGGTATGCCTCCACAGTGGGCTGCAGTAGGCGGGGGAGAAGGAGGTCTGGATGAATATAAAAGATACTATGGCCCAATTGATCCAGAGGGATTAGGAGTCGCTGGAGACCCACAAAGTGTAGTTTCCCAAACTCCAAAAACCACACATCAAACAAAGTCCTTGGGAAACCCAAGGTtgccacaaaaaaaacaaccctctGGGCATTTACCCATAAACCCAGCTTTGCCTCATTCTTCTCCACCACAGCATTCTTTCTGGAGGAGAAGCAGTCTTTCAAAAAGAAAAGGCTCTGGGGGACCCCTGTATGAAAACATCCTTCCTTTGGGACGGAGAGGTGGGGGCAGGtatggagggagggatggagcaGTGAGGAGAGGTCGTCGTCCTCCTCCTTTGCCTCTTCCTATGCCTCTTCCCTTCTCCTCCCCTAACCAACTTCCTCTTTCACCCTCAGCATCTGTGCACTACATTTCCACCTCCTCTAGCACATCTAGCTCCTCTTCCACCTCCTCTTCTGTATCAGTCTCACGATCTAATTCTCCTTCCTACTCTACTTCTTCGTACTCATCATCACAGAGTTTCAAATACAGGGCAGGTGAAAGAGATGCATATGATGAGTTTGACACTGATGAGCTTACAGAGGAGTCCAGCCTTCTTTTGGGTAGGAGAAAAAGTCGTTCACACATGTCATCTCGGTCTCTGCCCTGCAGTCCACCTCCACCCATACCACCACGCAAACCTTGCCCACAGAAGGCACAGATGAGAGACAGCACCACTAGCCAGCTGGCACAACTCCAAGAGTGGTGGGCTTcatggggggaaaaagagagagctaGAAAAGCAGGTGGTGGGAGAAGTAAGGGCAAAGAAGAGAAACGATattataaagagagagaaagggagagaaggaggaggaagaagggtcgaaagaaaaagaagagggcagagcgtgagagagagagagagcacaaaagACATaaagtaaagaagaaaaagaaaaaggagggaaaatCCAGGAAAAGGGAGAAGGAAAAGCGATCTGGTCAAGAAGAAGGGGAAATTGATGGTAAAGAGGTATTTGAAAAAGGGATAGAACAGAATCTGCCTTCCTACCCTGAGCTTAGGCGTAGCTCTTTCCAAAAGAAGAGTGAAAGCTCTATGCGGAGTTATGACTGGGATAtaaaaagagagggaggaaagagagagagtgataatCAAGAGGGTGGTGATGAAGAAGGAGCTAGGAGAAGAGAAAAGCACCACAGGAACCCTCAGTCCTATCACCATTCCAGGCCAAAGTCTAACAAACACGGTCTTTTGGGTCTGAAAGAGAGGAACATGGGAAAGGAGGTGAGATTCGTCCCCTTTTAGGAAAGAATGGAAGAGGTAAGACCTACTCAAGAGAAGGCCTGGCATTTCATGAATGGGATTCAGAAGAGGAGGAAGGGGAAGAATCAGAAGAGAGGGATAGAACTGAGgaacgaagaagaagaagagagagcagAGCAATAGAATCAGAATCtgaaaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479760 lncRNA downstream 1196 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 23019 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 148349 12000266 ~ 12000510 (-) True G404243
TU479622 lncRNA downstream 151389 11997070 ~ 11997470 (-) True G404241
TU479616 lncRNA downstream 177895 11970742 ~ 11970964 (-) True G404235
TU479803 lncRNA upstream 18896 12275268 ~ 12275502 (-) True G404421
TU480108 lncRNA upstream 258099 12514471 ~ 12515210 (-) True G404667
TU480079 lncRNA upstream 279975 12536347 ~ 12553725 (-) False fam131ba
TU480124 lncRNA upstream 318708 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 320160 12576532 ~ 12578806 (-) True G404682
XM_026928300.2 mRNA downstream 28989 12107898 ~ 12119870 (-) True cacng8a
XM_034301514.1 mRNA downstream 64696 12072924 ~ 12084163 (-) True si:dkey-14o18.2
XM_026928212.2 mRNA downstream 89464 12028221 ~ 12059395 (-) True slc2a3a
XM_026928346.2 mRNA downstream 144379 12001016 ~ 12004480 (-) True LOC113535156
XM_026928333.2 mRNA upstream 35370 12291742 ~ 12307057 (-) True dbpa
XM_034301544.1 mRNA upstream 52423 12308795 ~ 12317891 (-) True znf865
XM_034301807.1 mRNA upstream 72786 12329158 ~ 12348572 (-) False shisa7b
XM_026927829.2 mRNA upstream 72786 12329158 ~ 12348571 (-) True shisa7b
XM_026928119.2 mRNA upstream 98870 12355242 ~ 12391362 (-) True cnot3b
trnay-gua_21 other downstream 324896 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 326395 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 327895 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 329388 11819384 ~ 11819471 (-) True trnay-gua_18
trnay-gua_17 other downstream 330885 11817887 ~ 11817974 (-) True trnay-gua_17
TU480085 other upstream 174623 12430995 ~ 12483898 (-) True G404644
trnav-cac_22 other upstream 314092 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 315221 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 317227 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 318368 12574740 ~ 12574815 (-) True trnav-aac_24

Expression Profile