RNA id: XM_026928399.2


Basic Information

Item Value
RNA id XM_026928399.2
length 2661
RNA type mRNA
GC content 0.45
exon number 9
gene id fam131ba
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12515316 ~ 12553760 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacaCTTGCACGCAGCcttgcagagagagaaagagagagagagagggacacagagaaGAGGACAACAGAGACACCGGGAGAAGAAAGAGAGCGATGTCTGCTGAAAAGGCACCTCTTTCTCAGTCACTTGCCGGCCCTCACTAAGACACCATGGGCTGTATTGGCTCCCGCACTATCACGGCAGATGCAGTTCCTGTAAGGAAAGACGGAGATCAGCATGGACGGGCAGAGTTTTCTTGGGAAGGAATCAATCTGTCTATGGAGGACACCACCTCCATCTTGCCTCGTCTCAAACGGAACTCCAACGCCTATGGGATTGGAGCTCTGGCTAAGTCCTCTCTGTCaggtgtgtcagGTGTGACCAGGTCCATGAAGGACAAGGTAACTAAACCCACAGCTATGGCTCAAGGCCGTGTAGCCCACATGATTGAGTGGCAGAGTTGGGGCAAACCATCTGCTGGGCCACTAGGGGGAGCAGGTCTTTCCAACCTGCACCGCGAGAGGGAACGAAGACTTGAGAATGACGCCTACAGTGACCTAAGTGACGGGGAGAAGGAGGCACGAATGGCTGCTGGAGTGATGCAGCAATTTGCAATCTCTGAGGCCACATTGCTGGCCTGGAATTCTATGGATGGGGAGAGCTTCTGTGCTGACTCCAACCAGGGCAGTGTAGCACACCTCAGTGAAGTTAATCAGGAGAGCATTACCAGCAGAGATCAGCCTTTGCACCATTCATCTGCAGAAGTGTGGCCTCACACCTATGTGTCCCAGGGTCTGTACTGCCTTTCATCCTCTGATGCCTGGGAGCCAATCAGCAATGAGCTATCAGGCATGGCGTCTCCTGCTGCTGGCTCCTACATAGCTAGTGGGGCTTCTGGAGAAGGCTATGATTGCTCCACCCACTATCTGTCCCAGCAGCAGCTTGCACTTCAGCAGCAGAGCCACTtacagcagctgcagcagatGCAGCAGTACCAGCAGCAGCAACTCATGCAGTACCAGCAACAGTCACTGGAACATCGGCTACACAGCACCTCCCATTCTTTGCAAGCTACGCCCAATAGCACCATTCATAGCTTGGGTCCACCCACTCATCCACGACTGGCTGATTTGTGGGCAGCAGCACAAGTGGAGCCACATCAGATGGAAATAATGGGACACATGAACATAACCTTGGCAGAAATGGGCACGCCGGAACCATATGGTGAGGAatttgttacagaaaatgagtGCATCCCTGAGCAacaagaggaggaggaagccaAGGAGGATGACGTCACATTAACATTGGAACCTGAGGCAATGTCCATGGTGCCAGTTTTGACCTCACAGCCTCATAGAGAGGGTCCAGTGCCTGGTTGTGTGAGCCCACCCCTGTCACACGCAGAGCCAATGCCTGAGCACATGGCCTTCGAGGTCACATCCTGCATCATCCAATCCCTggaagagaaggaagaggaagtgGAGGAAGGGGCTGTGGTTGTCGTGGCGACCAATTAACAGCTTTTTTCAGGAGGGTCACTAAGGAAGAGTTTCAAAAATGGGACCGTCTTTACTGAAATAATCAACTAATTACACTAATGTATAACCACCCAAACCCAAGGTGTATGTTCTCATTTTTTTGTCAATCAAACAGGAGGACTCCGCAGTGAGATGCAATGATTTATATGTTCTTAAAAGTGATAAAGGATATAATTATAAAACTGCATTCTTTAAATGCAGGGACACACTAACAGACATGATAAGAGCAGAGATGTAGAGATGAAACTATGTGATATGTTGACCAGGGGAAGGACACGTTTAAAAGAAACTAAAGAAAACAGTGcaatacatacaaacatacaaagaCAACCAAAAGAAAGTGCATGCATTCTGAATATTTAAGTGACTGAATTACCAGTATACATATAGTAATAACTGAAATtgatttttgtaataaaattaaaagccaACAAAATATGATGTATTTCTATGTACATACAATATGTATGtttctatgtatgtgtgtgtatgttggtaTGACTGTATGATTGCATGTATGTATAAAGGTATATTCTCAAAAccattatctgtttattcacCATTTGGCAATAATGTTGTGTGAAGTGTCTCCAATGTATTTTACTTtcagcagccacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagctctttAAATAAGCAAGCACAATACTGCCCAAATGGAAACAGTGCTATACTGTTCAACACCTATACATATAAGACTTATGCACTATTATGACTATAAAAGAATGTATGGTCTTTTGGTTGGCGACTACATTTTTTGTTCCATTAGGTCTTTTCCAAAATctttcactgtatttttttttttaactcatgggttttctgttttttatttatttatttatttaattaatttttttttgcataatattGATAATCACAATTATTTGACTGGACAATTAAAGCTGGAAGTTCAGATACAGCTTCCATCGCCCATCAGTCTCAATATAAAACCTGCAGAATGAGTGATTTGTTAGACCAGAACAGTGTAATGAAAGACAGAACACATTCTTGCACACAGTAGTTGACATTGTCTGGAAAAGTTACCAAAGGATACTTTAACCTCCAGAGTAACACCAAACAGATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480108 lncRNA downstream 106 12514471 ~ 12515210 (-) True G404667
TU479803 lncRNA downstream 239814 12275268 ~ 12275502 (-) True G404421
TU479760 lncRNA downstream 367653 12146083 ~ 12147663 (-) False grin2da
TU479664 lncRNA downstream 389476 12125457 ~ 12125840 (-) True G404282
TU479624 lncRNA downstream 514806 12000266 ~ 12000510 (-) True G404243
TU480124 lncRNA upstream 21320 12575080 ~ 12577284 (-) True G404681
TU480125 lncRNA upstream 22772 12576532 ~ 12578806 (-) True G404682
TU480131 lncRNA upstream 35512 12589272 ~ 12591533 (-) True G404687
TU480136 lncRNA upstream 47872 12601632 ~ 12635213 (-) True G404692
XR_003403574.2 lncRNA upstream 109251 12663011 ~ 12677646 (-) True LOC113535190
XM_034301442.1 mRNA downstream 33174 12465737 ~ 12482142 (-) True styk1a
XM_026927862.2 mRNA downstream 52960 12447738 ~ 12462356 (-) True zgc:194578
XM_034301702.1 mRNA downstream 74969 12434972 ~ 12440347 (-) False si:ch211-232m10.6
XM_026928404.2 mRNA upstream 83090 12636850 ~ 12649319 (-) True si:ch211-288g17.3
XM_034301472.1 mRNA upstream 134002 12687762 ~ 12724515 (-) True kmt2ba
XM_026928396.2 mRNA upstream 207952 12761712 ~ 12770589 (-) True ndufv1
XM_026928395.2 mRNA upstream 208031 12761791 ~ 12770681 (-) False ndufv1
XM_026928544.2 mRNA upstream 218161 12771921 ~ 12783866 (-) True hcn3
TU480085 other downstream 31418 12430995 ~ 12483898 (-) True G404644
trnay-gua_21 other downstream 691353 11823876 ~ 11823963 (-) True trnay-gua_21
trnay-gua_20 other downstream 692852 11822377 ~ 11822464 (-) True trnay-gua_20
trnay-gua_19 other downstream 694352 11820877 ~ 11820964 (-) True trnay-gua_19
trnay-gua_18 other downstream 695845 11819384 ~ 11819471 (-) True trnay-gua_18
trnav-cac_22 other upstream 16704 12570464 ~ 12570536 (-) True trnav-cac_22
trnav-cac_23 other upstream 17833 12571593 ~ 12571666 (-) True trnav-cac_23
trnav-cac_24 other upstream 19839 12573599 ~ 12573671 (-) True trnav-cac_24
trnav-aac_24 other upstream 20980 12574740 ~ 12574815 (-) True trnav-aac_24
trnav-aac_25 other upstream 22972 12576732 ~ 12576804 (-) True trnav-aac_25

Expression Profile