RNA id: TU480264


Basic Information

Item Value
RNA id TU480264
length 2312
lncRNA type read_through
GC content 0.42
exon number 2
gene id G404799
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12817584 ~ 12942105 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAACTTTATAAAATAAGTTCaacatttggattttttttttatactgttctTTGTTTGGTCTTTCACATCTACAAACCATTTAACTAAGCagttagtgtttgtgttacttGTTTGTAATAATTATAGTACTCAAGTAAACTTTATGACCTTCCTGCAGTGGATGTGGTAGATGGGCCTGGGAGAGAAGGAGTTAAGCATTCAAAGACAGCATTTTTGGAGGCTTAATATTATGCTTGGTTGACAGGTGTTTTGCTAAAAACATCTTCAGAAGCAAAGGTTTTATTGCACAGTGAGTGGTCTTATATCTACTTGACAAAAGGTATGAAAAGCCTCCTGTTCTGCTCCTTGCTGCACTGTCTCTGGATCAGTCTGGAGCTAAAAGTGCTTCACTGTTTGACTCATGGAGGAGGTGAGAGACATTGTCCGTCATGAGCAACAGTTTAGCCAGTTTAGCATCCTCTCTTAAACAGTCAATTCCAAGGAGTCCAGGTTGGTCCCAAGGACCTCTGTAGTCTTCCTAATTAGTTTCCTGCCTTCATGCCACTGTGTATCATCTTGCTACATATATTAAAGGACCAGAGCTTCCTCAAAATGTAGTTGTTTTTCCTCTGTCCTTTACTGTATACTGTCTTCTCCACAGTGTCTCCCAGGAGATAGGGGTCAGTGGGGTCTTAGTATTCCTAAAGTCCATCACCATCTCCTTTGTCTTGTCCACATTGTGCTTTATGTCGTTTATTCCACAGTACTCAATgaagctgtcaatcacagccCTATATTCTGACTTCTTCTCAGCACTGACGCTCCACTACGGCAGTGTGATCAGATGGCACCAATCCAAATTGTGCTTGAaatctgaaaaagaaaggagaCAGAACTGTCCCCTGTGGAGTGCCTTCGCACGCTCACTGCCTGGTCCGAGACACAGTTCTGCAAACGCGTCTGGTTGTCATATAGTCAGTGATTAAGGGGAATGTGGTAGTGTCCTCCAGCATCTCCCTTAGATTCTTGCCAAGTAAAGAGGGCTGTTCGGTGTTAAAAGCACAGGAgggctcccaagtggtgcaaGAGAAAAGCGTACGCCTTATCGCTGGGAGAtcacgagtttgaatcccgatgatgccGTAGCCATCTGCAAAACTGGCCCTGCTCTCAGGGTTGGAGgttctctcttccctgtcagtcacagcaacactagaCAATCATGGGCGTCATGCATGCAGAATAGGGCAGAGTGCGCTGTGCTGCCAGTTCTAAAGGATGCAGACGTTGGTTTGACATGACTCAGAGAAAACACAGGCTTGCCCCACCCTCCCTGGTTGATCATGGTTGATCACACACCCTCATGTGATAAGACTTAGCTGGTGGGTGGGATTTAGCAAGACCAAATTAGCGGAGAAAATAGGGGAACACTGGAGAATCAAAATATGTGACACTCACAGGGGCCTCTGCAGAAGACAACAAGGTTTAAAGCTGTGTTCCCAGTTAATAAAAGGTGTCCTAGGTGGTGACAAAATGAATGTAAAGTATTTTAGCATGGAGTTGGACCTCCAAGACGTGCCAGAATAGATGAAGTGTGCCTtgacatacagtggatataaaaagtctacacacccctgttaaaatgccaggcttctgtgaccacattattttgtttttttatgtttactcGCCCCctctaaaagatttcagtttgtttttcggatgagttgtacaggttataggtcacattaaaggtggaaaaagttctgaaatgatttatctttcttttaaacctggcattttaacaggggtgtgtagagtttttatatccactgtagattCTACatgtctctggaactgtactgagccatgccagcaaaatgtccTGACTTCATGGGCACACGTTGCAATCAGAAGGTAATCAGCTCAGTGAGGCCAGATCCAGAAGATACACGTATCCATCAGATCCATCTGAGGCAGatgtaaacacaatctgtacaCTGTACTTTGTTCAGCCTGGCTTTATGGAGAAAATTCCTGCTGACAAGATACAGGGAGTcggaaaagtcaggaaccaatgggaatatGCTGAGCAAATATGTCCATTCGaaatgttgagcaaaatccgcaaaaaaaaaatgatacactGGCTGAGAAAATGCGTAAAATGATACGCTGAGAAAATGCGTAGAGCATAAGGGTGACCATGTAGCACATAcgcagtaaataataaatacaaaattaagtgtatgtagttttactctcattggttcctgactttttggacaccttgtattatgtttttttttttgttgttttttttttttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 131116 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 139938 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 182371 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 226051 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 238778 12576532 ~ 12578806 (-) True G404682
TU480293 lncRNA upstream 36551 12913941 ~ 12923945 (-) True G404818
TU480384 lncRNA upstream 106323 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 114811 12992201 ~ 12993258 (-) True G404900
TU480392 lncRNA upstream 121853 12999243 ~ 13002077 (-) True G404904
TU480404 lncRNA upstream 141203 13018593 ~ 13021304 (-) True G404916
XM_034301683.1 mRNA downstream 4155 12795731 ~ 12813429 (-) True clk2a
XM_026928253.2 mRNA downstream 4155 12796845 ~ 12813429 (-) False clk2a
XM_034301684.1 mRNA downstream 4155 12796845 ~ 12813429 (-) False clk2a
XM_026928254.2 mRNA downstream 9938 12795731 ~ 12807646 (-) False clk2a
XM_034301685.1 mRNA downstream 24269 12790796 ~ 12793315 (-) True si:ch211-81a5.8
XM_034301716.1 mRNA upstream 38588 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA upstream 38588 12915978 ~ 12926237 (-) False scamp3
XM_034301498.1 mRNA upstream 59834 12937224 ~ 12946377 (-) True crabp2b
XM_034301473.1 mRNA upstream 210097 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 512526 13389916 ~ 13392833 (-) True dpm3
trnav-cac_26 other downstream 237933 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 238783 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 239924 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 240780 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 242769 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 263304 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 512574 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 678766 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 882371 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 882371 13759761 ~ 13761555 (-) True s100a11

Expression Profile