RNA id: TU480265


Basic Information

Item Value
RNA id TU480265
length 313
lncRNA type read_through
GC content 0.35
exon number 2
gene id G404799
representative False

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12817584 ~ 12942105 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttgttgttttttttttttttaaatctgcaaaACGTTAAACATCACTGTTTCATCATCCCTAGTGTCAAGGATCGATATAGTAACATCTTGTTCCTGCAGACACAGTGGATATTTAATTGTTTCCTAACAGACAGCTGTTGAAGATGACCCTTTCCTCTGCACAGACGAGAACTTGTTTGATTTGATAaagttttgtttgattttgataCGAAGTAGAGGATCACAATTCTCAACAATAGTATATCTTAGATTAATCTGGATTTGGGGGTGTGAGTTGCAGTTTCGGACCGTAAATGAAGATCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480163 lncRNA downstream 188343 12686190 ~ 12686468 (-) True G404719
XR_003403574.2 lncRNA downstream 197165 12663011 ~ 12677646 (-) True LOC113535190
TU480136 lncRNA downstream 239598 12601632 ~ 12635213 (-) True G404692
TU480131 lncRNA downstream 283278 12589272 ~ 12591533 (-) True G404687
TU480125 lncRNA downstream 296005 12576532 ~ 12578806 (-) True G404682
TU480384 lncRNA upstream 41608 12983713 ~ 12984373 (-) True G404896
TU480388 lncRNA upstream 50096 12992201 ~ 12993258 (-) True G404900
TU480392 lncRNA upstream 57138 12999243 ~ 13002077 (-) True G404904
TU480404 lncRNA upstream 76488 13018593 ~ 13021304 (-) True G404916
TU480387 lncRNA upstream 80639 13022744 ~ 13025118 (-) True G404899
XM_034301515.1 mRNA downstream 19319 12838204 ~ 12855492 (-) False lrrc71
XM_034301516.1 mRNA downstream 19319 12838204 ~ 12855492 (-) False lrrc71
XM_026928427.2 mRNA downstream 19319 12838204 ~ 12855492 (-) True lrrc71
XM_026928313.2 mRNA downstream 39339 12816071 ~ 12835472 (-) True setdb1a
XM_026928314.2 mRNA downstream 39340 12816071 ~ 12835471 (-) False setdb1a
XM_034301473.1 mRNA upstream 145382 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 447811 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 466952 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 466952 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 470863 13412968 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 295160 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 296010 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 297151 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 298007 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 299996 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 198589 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 447859 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 614051 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 817656 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 817656 13759761 ~ 13761555 (-) True s100a11

Expression Profile