Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480293 |
| length | 560 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G404818 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 12913941 ~ 12923945 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480264 | lncRNA | downstream | 36551 | 12817584 ~ 12877390 (-) | True | G404799 |
| TU480163 | lncRNA | downstream | 227473 | 12686190 ~ 12686468 (-) | True | G404719 |
| XR_003403574.2 | lncRNA | downstream | 236295 | 12663011 ~ 12677646 (-) | True | LOC113535190 |
| TU480136 | lncRNA | downstream | 278728 | 12601632 ~ 12635213 (-) | True | G404692 |
| TU480131 | lncRNA | downstream | 322408 | 12589272 ~ 12591533 (-) | True | G404687 |
| TU480384 | lncRNA | upstream | 59768 | 12983713 ~ 12984373 (-) | True | G404896 |
| TU480388 | lncRNA | upstream | 68256 | 12992201 ~ 12993258 (-) | True | G404900 |
| TU480392 | lncRNA | upstream | 75298 | 12999243 ~ 13002077 (-) | True | G404904 |
| TU480404 | lncRNA | upstream | 94648 | 13018593 ~ 13021304 (-) | True | G404916 |
| TU480387 | lncRNA | upstream | 98799 | 13022744 ~ 13025118 (-) | True | G404899 |
| XM_034301790.1 | mRNA | downstream | 13981 | 12860573 ~ 12899960 (-) | False | ash1l |
| XM_026928440.2 | mRNA | downstream | 13981 | 12860573 ~ 12899960 (-) | False | ash1l |
| XM_026928439.2 | mRNA | downstream | 13981 | 12860573 ~ 12899960 (-) | True | ash1l |
| XM_026928441.2 | mRNA | downstream | 13982 | 12860573 ~ 12899959 (-) | False | ash1l |
| XM_034301515.1 | mRNA | downstream | 58449 | 12838204 ~ 12855492 (-) | False | lrrc71 |
| XM_034301498.1 | mRNA | upstream | 13279 | 12937224 ~ 12946377 (-) | True | crabp2b |
| XM_034301473.1 | mRNA | upstream | 163542 | 13087487 ~ 13091746 (-) | True | LOC117596411 |
| XM_026927904.2 | mRNA | upstream | 465971 | 13389916 ~ 13392833 (-) | True | dpm3 |
| XM_026927908.2 | mRNA | upstream | 485112 | 13409057 ~ 13443086 (-) | False | trim46b |
| XM_026927906.2 | mRNA | upstream | 485112 | 13409057 ~ 13443086 (-) | True | trim46b |
| trnav-cac_26 | other | downstream | 334290 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 335140 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 336281 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 337137 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| trnav-aac_24 | other | downstream | 339126 | 12574740 ~ 12574815 (-) | True | trnav-aac_24 |
| TU480489 | other | upstream | 216749 | 13140694 ~ 13141115 (-) | True | G404999 |
| TU480639 | other | upstream | 466019 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 632211 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 835816 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 835816 | 13759761 ~ 13761555 (-) | True | s100a11 |
