Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480384 |
| length | 559 |
| lncRNA type | inter_gene |
| GC content | 0.53 |
| exon number | 2 |
| gene id | G404896 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 12983713 ~ 12984373 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480265 | lncRNA | downstream | 41608 | 12874811 ~ 12942105 (-) | False | G404799 |
| TU480293 | lncRNA | downstream | 59768 | 12913941 ~ 12923945 (-) | True | G404818 |
| TU480264 | lncRNA | downstream | 106323 | 12817584 ~ 12877390 (-) | True | G404799 |
| TU480163 | lncRNA | downstream | 297245 | 12686190 ~ 12686468 (-) | True | G404719 |
| XR_003403574.2 | lncRNA | downstream | 306067 | 12663011 ~ 12677646 (-) | True | LOC113535190 |
| TU480388 | lncRNA | upstream | 7828 | 12992201 ~ 12993258 (-) | True | G404900 |
| TU480392 | lncRNA | upstream | 14870 | 12999243 ~ 13002077 (-) | True | G404904 |
| TU480404 | lncRNA | upstream | 34220 | 13018593 ~ 13021304 (-) | True | G404916 |
| TU480387 | lncRNA | upstream | 38371 | 13022744 ~ 13025118 (-) | True | G404899 |
| TU480385 | lncRNA | upstream | 40874 | 13025247 ~ 13025457 (-) | True | G404897 |
| XM_034301498.1 | mRNA | downstream | 37336 | 12937224 ~ 12946377 (-) | True | crabp2b |
| XM_034301716.1 | mRNA | downstream | 57449 | 12915978 ~ 12926264 (-) | True | scamp3 |
| XM_034301717.1 | mRNA | downstream | 57476 | 12915978 ~ 12926237 (-) | False | scamp3 |
| XM_034301790.1 | mRNA | downstream | 83753 | 12860573 ~ 12899960 (-) | False | ash1l |
| XM_026928440.2 | mRNA | downstream | 83753 | 12860573 ~ 12899960 (-) | False | ash1l |
| XM_034301473.1 | mRNA | upstream | 103114 | 13087487 ~ 13091746 (-) | True | LOC117596411 |
| XM_026927904.2 | mRNA | upstream | 405543 | 13389916 ~ 13392833 (-) | True | dpm3 |
| XM_026927908.2 | mRNA | upstream | 424684 | 13409057 ~ 13443086 (-) | False | trim46b |
| XM_026927906.2 | mRNA | upstream | 424684 | 13409057 ~ 13443086 (-) | True | trim46b |
| XM_034301492.1 | mRNA | upstream | 428595 | 13412968 ~ 13443086 (-) | False | trim46b |
| trnav-cac_26 | other | downstream | 404062 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 404912 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 406053 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 406909 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| trnav-aac_24 | other | downstream | 408898 | 12574740 ~ 12574815 (-) | True | trnav-aac_24 |
| TU480489 | other | upstream | 156321 | 13140694 ~ 13141115 (-) | True | G404999 |
| TU480639 | other | upstream | 405591 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 571783 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 775388 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 775388 | 13759761 ~ 13761555 (-) | True | s100a11 |
