Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480385 |
| length | 211 |
| lncRNA type | inter_gene |
| GC content | 0.32 |
| exon number | 1 |
| gene id | G404897 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13025247 ~ 13025457 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480387 | lncRNA | downstream | 129 | 13022744 ~ 13025118 (-) | True | G404899 |
| TU480404 | lncRNA | downstream | 3943 | 13018593 ~ 13021304 (-) | True | G404916 |
| TU480392 | lncRNA | downstream | 23170 | 12999243 ~ 13002077 (-) | True | G404904 |
| TU480388 | lncRNA | downstream | 31989 | 12992201 ~ 12993258 (-) | True | G404900 |
| TU480384 | lncRNA | downstream | 40874 | 12983713 ~ 12984373 (-) | True | G404896 |
| TU480415 | lncRNA | upstream | 35887 | 13061344 ~ 13064153 (-) | True | G404927 |
| TU480433 | lncRNA | upstream | 61504 | 13086961 ~ 13087199 (-) | True | G404943 |
| TU480446 | lncRNA | upstream | 81276 | 13106733 ~ 13106957 (-) | True | G404956 |
| TU480449 | lncRNA | upstream | 86976 | 13112433 ~ 13112641 (-) | True | G404959 |
| TU480472 | lncRNA | upstream | 101942 | 13127399 ~ 13127656 (-) | True | G404982 |
| XM_034301498.1 | mRNA | downstream | 78870 | 12937224 ~ 12946377 (-) | True | crabp2b |
| XM_034301716.1 | mRNA | downstream | 98983 | 12915978 ~ 12926264 (-) | True | scamp3 |
| XM_034301717.1 | mRNA | downstream | 99010 | 12915978 ~ 12926237 (-) | False | scamp3 |
| XM_026928439.2 | mRNA | downstream | 125287 | 12860573 ~ 12899960 (-) | True | ash1l |
| XM_034301473.1 | mRNA | upstream | 62030 | 13087487 ~ 13091746 (-) | True | LOC117596411 |
| XM_026927904.2 | mRNA | upstream | 364459 | 13389916 ~ 13392833 (-) | True | dpm3 |
| XM_026927908.2 | mRNA | upstream | 383600 | 13409057 ~ 13443086 (-) | False | trim46b |
| XM_026927906.2 | mRNA | upstream | 383600 | 13409057 ~ 13443086 (-) | True | trim46b |
| XM_034301492.1 | mRNA | upstream | 387511 | 13412968 ~ 13443086 (-) | False | trim46b |
| trnav-cac_26 | other | downstream | 445596 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 446446 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 447587 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 448443 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| trnav-aac_24 | other | downstream | 450432 | 12574740 ~ 12574815 (-) | True | trnav-aac_24 |
| TU480489 | other | upstream | 115237 | 13140694 ~ 13141115 (-) | True | G404999 |
| TU480639 | other | upstream | 364507 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 530699 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 734304 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 734304 | 13759761 ~ 13761555 (-) | True | s100a11 |
