RNA id: TU480387


Basic Information

Item Value
RNA id TU480387
length 632
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G404899
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13022744 ~ 13025118 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAGATCCCCATAGTGTGCAGTAAGCAcaaaccagcaaaaaaaaaaaaaaaaaaaaatgccttgcTGTGCAGCTGTTACACAATGATGTTGGTCCCATTTTATGTGCAGTTTCAGTTCAAGGCCAGATGGAGCTTTTGAAAGCCTTCCCTCCAaactcccaaacacacacacacacacacacacttttaaatagTGTGCATGAACGAGTGTGGCATTGCAGGAATAGTGTTGAGCCGGTTATTAGCTGTACAAGGATGTGCCTATAAACAGTTATTGGTCATATGCTGTATACTGACGAGGctgtaaatgtatattattaacCCAAGTCTTGTGCAGCGGGTTAGTGTTAATCtgttaaatgtatatatttgtttcaGTGTTCTTTGTATCAGGTATTTAAAATGAGCAGTTGGTCCCATAATTAATTTACAGctgaggaaaatattttttttctccaaaccaACTTCttcagtcttctttttttttttttttttacctggcCATGTTAGTATGGGCGGTTGGCATCTTTGGGCCTTTTCAGCTGCACTTTCAGTCTTTTCATGCCAATCTGAAATCCATTCATGGCCTGGATGGCAGTCTGAGCGCTGGCGGGGTTGTCAAAGCTtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480404 lncRNA downstream 1440 13018593 ~ 13021304 (-) True G404916
TU480392 lncRNA downstream 20667 12999243 ~ 13002077 (-) True G404904
TU480388 lncRNA downstream 29486 12992201 ~ 12993258 (-) True G404900
TU480384 lncRNA downstream 38371 12983713 ~ 12984373 (-) True G404896
TU480265 lncRNA downstream 80639 12874811 ~ 12942105 (-) False G404799
TU480385 lncRNA upstream 129 13025247 ~ 13025457 (-) True G404897
TU480415 lncRNA upstream 36226 13061344 ~ 13064153 (-) True G404927
TU480433 lncRNA upstream 61843 13086961 ~ 13087199 (-) True G404943
TU480446 lncRNA upstream 81615 13106733 ~ 13106957 (-) True G404956
TU480449 lncRNA upstream 87315 13112433 ~ 13112641 (-) True G404959
XM_034301498.1 mRNA downstream 76367 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 96480 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 96507 12915978 ~ 12926237 (-) False scamp3
XM_026928439.2 mRNA downstream 122784 12860573 ~ 12899960 (-) True ash1l
XM_034301473.1 mRNA upstream 62369 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 364798 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 383939 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 383939 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 387850 13412968 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 443093 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 443943 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 445084 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 445940 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 447929 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 115576 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 364846 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 531038 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 734643 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 734643 13759761 ~ 13761555 (-) True s100a11

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU266555 True 1195 lncRNA 0.41 2 NC_035919.1 9635650 ~ 9638594 (-)