RNA id: TU480392


Basic Information

Item Value
RNA id TU480392
length 806
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G404904
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12999243 ~ 13002077 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGGCTTTTAGGAGGAAATCCACTGATGGAAAACATGCTGTCGTCTTCAGTGCTCATCTTTTAGGAGAAGTGCAAATGCAccgttatctctctctctctctctctctctctctgttgttaatcctgatgtttgtttgtttgtttgtttgtttgtttgctttctcGCACGCGCGCTGTTGCGTCTTTAACGCGCCTTGGCACAAAGCAGCGACATgcagacaaacagaaatgtgtgCATCACCTCTACTCCGTCCTGATCGCGTCTTTCCACACTTTCACTCCTGAGAGAAGGCTTTGGCAGGCTGATAATCCACCCACACTGAGATGCTCAGTGTCCTGATCCCTAACACGAAgcctcacaaaaaaaacaaacccaaaaaaaaaaaaaaaaagagaaagcaaaaccaaacaaacccaGATCCGTGTAATGGCGGAGAAGTCGGACAGATTGGAGGCTACTCAGTGTCTGGGCTCTGAATCTGTGTAGCCCTTTGCTTTGACGTCGTAAGCCGGTGTCTCCCCCTGTCCGTGTCCAGACCTCCCCCTGGGTGTAGGAAAGCGGGATGACTGCTCAAGGGAGCGTCGACATTTTCCCAAccgGGCTGTGcgcttcttctcctcctcctcctcctcctccttcttcttcttctcagaCAAAAAGAGATGAACGGTGTGGATTTACAGGAATGTCTTCTTTCATTTGGCCATCTGCTTCATGCTCCTAAAATCCCATCCACATCCCAGTGTGCACACTGAAGGTTCCTCACCTCCTGACCCGAGCTTCAATCCGCACACGTCAGAAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480388 lncRNA downstream 5985 12992201 ~ 12993258 (-) True G404900
TU480384 lncRNA downstream 14870 12983713 ~ 12984373 (-) True G404896
TU480265 lncRNA downstream 57138 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA downstream 75298 12913941 ~ 12923945 (-) True G404818
TU480264 lncRNA downstream 121853 12817584 ~ 12877390 (-) True G404799
TU480404 lncRNA upstream 16516 13018593 ~ 13021304 (-) True G404916
TU480387 lncRNA upstream 20667 13022744 ~ 13025118 (-) True G404899
TU480385 lncRNA upstream 23170 13025247 ~ 13025457 (-) True G404897
TU480415 lncRNA upstream 59267 13061344 ~ 13064153 (-) True G404927
TU480433 lncRNA upstream 84884 13086961 ~ 13087199 (-) True G404943
XM_034301498.1 mRNA downstream 52866 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 72979 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 73006 12915978 ~ 12926237 (-) False scamp3
XM_026928439.2 mRNA downstream 99283 12860573 ~ 12899960 (-) True ash1l
XM_034301473.1 mRNA upstream 85410 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 387839 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 406980 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 406980 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 410891 13412968 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 419592 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 420442 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 421583 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 422439 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 424428 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 138617 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 387887 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 554079 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 757684 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 757684 13759761 ~ 13761555 (-) True s100a11

Expression Profile