RNA id: TU480404


Basic Information

Item Value
RNA id TU480404
length 1408
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G404916
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13018593 ~ 13021304 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGTATTCTGAGGTGTTGAAGAGGCGTGGTCACCTGAGGATGGGGTGATTGACGCGATGGGTGTCGCTATGATGCTGCTTGGGTTAAGAGCAGCCAACTGCTGCATCTGCACCGCGGCAACTGTTGCCACGGGAGACAGATAGGCGGATTGAGCTACCAACGCCTGCTGCTGGaccagctaaaaaaaaaaagaaaaaacattgttaTATTATTCCAGTGATATGAGTAGATAAAAGCTCAAAAAGCTCAAAATTTAGTTGCTAACACAGTTTGAAGCATGAGTGCGTtaaaatttcataatttaaaGCCAGTGGTGTGCAAATAGGATATTCATATCTACATATTTCAACATCAGGATACACTTTAAAATGTAGTATAATACTCAGTAATTACTTACTGTGTGTAATGATTGTAATCACTTAATTAAAATTTCCCCcttacattattataatattttcacaTATCCCTCCGTCACATGATCGGTATAGTAGTTAACTACCAAGATAGCATTAGTACTCACGGCCTGTGGGTAAGCGCCGTCAGGGATTAGTACAGTACCAGGTTATTACTCACGCCTGTGTGTAAGGGTCGTCagggtttagtacagtagtaggttAGTACTCACGCCTGTGTGTAAGGGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGCTGTCAGGGATTAGTACAGTACCAGGTTATTACTCACGCCTGTGTGTAAGGGTCGTCAGGGTTTAGTACAGTAGCAGgttAGTACTCACGCCTGTGTGTAAGCGCTGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGCTGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGCTGTCagggtttagtacagtagtaggttAGTACTCACGCCTGTGTGTAAGCGCTGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGTCGTCagggtttagtacagtagtaggttAGTACTCACGGCCTGTGTGTAAGCGCCGTCagggtttagtacagtagtaggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480392 lncRNA downstream 16516 12999243 ~ 13002077 (-) True G404904
TU480388 lncRNA downstream 25335 12992201 ~ 12993258 (-) True G404900
TU480384 lncRNA downstream 34220 12983713 ~ 12984373 (-) True G404896
TU480265 lncRNA downstream 76488 12874811 ~ 12942105 (-) False G404799
TU480293 lncRNA downstream 94648 12913941 ~ 12923945 (-) True G404818
TU480387 lncRNA upstream 1440 13022744 ~ 13025118 (-) True G404899
TU480385 lncRNA upstream 3943 13025247 ~ 13025457 (-) True G404897
TU480415 lncRNA upstream 40040 13061344 ~ 13064153 (-) True G404927
TU480433 lncRNA upstream 65657 13086961 ~ 13087199 (-) True G404943
TU480446 lncRNA upstream 85429 13106733 ~ 13106957 (-) True G404956
XM_034301498.1 mRNA downstream 72216 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 92329 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 92356 12915978 ~ 12926237 (-) False scamp3
XM_026928439.2 mRNA downstream 118633 12860573 ~ 12899960 (-) True ash1l
XM_034301473.1 mRNA upstream 66183 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 368612 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 387753 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 387753 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 391664 13412968 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 438942 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 439792 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 440933 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 441789 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 443778 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 119390 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 368660 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 534852 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 738457 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 738457 13759761 ~ 13761555 (-) True s100a11

Expression Profile