RNA id: TU480415


Basic Information

Item Value
RNA id TU480415
length 2771
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G404927
representative True

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13061344 ~ 13064153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAggaaacaaatacacaaagccCAAAGGTTTGGTTATCCACAGTCTTTTATCTTAAATTGCATAAAGATGAtacaaaatacaacataaaaaCACTGGCAGTTGTGACACtgatcatgtttttgtgtgtatcaGGGATGTAGACAATGGTGAGATTTGATTTGGTTGGATTGGTTTTGGCATTAGGTTGTAAGGGGTGATTAATTTAGATGAGGAGGAGAggcaagaacagaaaaaaagagaaagagtacTTGTAGTCTGGAAGTTTAAGCTCGTCATATCAGCTTCAGAATGGTATTTGTTTTAGATTCAGGGTGATATCATCTGCACCGCACATTATTTTTCCAGTTACTATGTAGTTAAACAAAACATGGCTGCTTCTCAGTATTTAAGAAGAAGCTAAGCCTACTGGCATGAATGGATTGTACCAAAATAAAGAAGGCAAGCTTGGAGGGCAAGAGAAGGATCAGCAAATACAAGGTAACAAATGCATTTAAGAAATAAAGCACTTACAAGCAGTAAGAAAACCTAAAACCAGACACTGACAGCTGGATCAATGGTTAAACAAAGATTTATCGTCATTAGCTGCAGTGAAATAAACAACAAGACCACAACATGTAAACCTTAAGTGTAATCATATTCCTATTCCTAGTCTTAGGTATTTTCTCATCTTTAATTCTAACACTGGATGTAATGTAGAGTTCAGTGGGTTTGTGAAACATATTGAGCTCAGATAGAATTTACAGCATTACAGAATGACTTTACAGATGGACATGTTTAACTTTTAAACCCATAAACCTCATGTGTCTATTTCAGCCTTGTGGAAGCGTATGAGTTTTACAGATGCATAGTGTTACAAACTGACTCAACTATAAAGCACGTCAATCTCCAGTCTAACTCTGGCTTTATTTCTATGGATCAAGTTTTATAAAGTGCATCTGATGGCCAAAAGAGTGATAAATACTGACTCTTCATCTTATTAATACTACAACTGATATAAAAGTTATTGGCATAAGATAGAACTGTTACATTCTAAGAACTTATTTGGTAagacatctcttttttttcctgtttgtaaaCAGGATGCTGAACAAGTTGctattgaaattaaatttacaaatctaaatgttttttttccccccaacagCTGACTCCCGTACGGAACAGAAATCCTTCTTTACTCATTTTACTGAAATGTAGAGTATCAGTCACATGATATTTAACAACTAAAGCATAATCAATAAGAaactgtgttgtttttcttaaattacattatttgcATCAACAAAATTGGAACTTCTTGGAATCTTCATGAATAAATGTGGACCtcaaataaaatgatgtaatgaaaaacataaaaaacaaacagtaaaataaaaatacagtaaaatcatATTAATCTGAGTAATTTTTGttaataaagagaaagacaaacaggcaaataaaataaggaagaatgaaatgtcacaaaatatcttttttctttGACATACAACTTTGATTTTGAGCAAATCTTTAACTGAGATGAGTTTTTTTATGCTGGCACATACTGAATTAGCCAATAACATCTAAAACTGGATTTGACAGATTTTGATGAGAGACAATCAAGGTGCTGGACAAACATAAGGCACCAAAGGCAGTAGAATTAAACATTCAGCTTCATGATGGGGTGTCTGGGCAGCATAGCTGGTTCAGCCGAGCTAAAAGAGATTTCTAGTTGTTCTGCACAGTTCTGCGCAGCTTAATATCAACGTGTCAGGTTCTCATCAAGTGTGTTTAAGCGGGGACATTGATCAGTTTTTTCGTGGTCCTCAAAGATCAGATTCTAGGAGATAATCTCTAGGGCAGTGGTAGTGTGTAGCAAAATTAAACTATAGTGCAACTGAAATGTGGGCAGTACACAGGAGGGCTCACAacagtgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtgttcaTACATACACTAGGAATGTGTTTGGAGACTTAACTAAAGGCCGCTTGGTGAAAACAATTCTGCACTTATAACTGAGCTTGACTTCAGGTAAATCCATAAGGTTGCTTGTAAATACAAAGCCAAAGATCGGTGCTCTTCAAGCTTAGCAAATATTCACAGAACAGAAACGGAGGCGTGACGGATTTACATAATGATCATGTGTGACGAGAAACAGCAGTAGTAaggcaagaaagaaagacagggaaCGAGTGAGGGTTTCACATTAACCAGGCAATAGGCAGGTCATACAAAAAGCACAAAGGAAAATTCACTGCCTCGAGATTTCTTCTGCAGAATTTAGTGCATTTTCTAAAGTTGACCTTTATGATTATAACTGAAACATAATTTTTGGGATTAGTGTTTAAGTGTGAACCTAATACTTGgtcaaatgtatgtgtgtgactgtatatgtataagCCAATTTTCCAAACCAGCAGCCTCTATCCCTGCCTCAATCTATCAGtctgggcgtgtgtgtgtgtatgtaggtgtgtgtgtatatgtgtgtgtgttacagagggCAGGGGAGGACTACACCTCTGCTCatcctctcccctctctcctccTATCCGTACCCATCACTCCGTCTTGCGGTGGTGGTTGTTGTTTGAGGCAGAATGGCCGTTCTGCAGCGGTCCGTTTTTCGTCTTGGGTCGTCTCTCACTCTCCTGCACCTCGTCCtcgtcctcatcctcatcctccgaGTCATCCGTCTCTTCTCTGTCACTCCGCTCGTCTTCCACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480385 lncRNA downstream 35887 13025247 ~ 13025457 (-) True G404897
TU480387 lncRNA downstream 36226 13022744 ~ 13025118 (-) True G404899
TU480404 lncRNA downstream 40040 13018593 ~ 13021304 (-) True G404916
TU480392 lncRNA downstream 59267 12999243 ~ 13002077 (-) True G404904
TU480388 lncRNA downstream 68086 12992201 ~ 12993258 (-) True G404900
TU480433 lncRNA upstream 22808 13086961 ~ 13087199 (-) True G404943
TU480446 lncRNA upstream 42580 13106733 ~ 13106957 (-) True G404956
TU480449 lncRNA upstream 48280 13112433 ~ 13112641 (-) True G404959
TU480472 lncRNA upstream 63246 13127399 ~ 13127656 (-) True G404982
TU480487 lncRNA upstream 76267 13140420 ~ 13140655 (-) True G404997
XM_034301498.1 mRNA downstream 114967 12937224 ~ 12946377 (-) True crabp2b
XM_034301716.1 mRNA downstream 135080 12915978 ~ 12926264 (-) True scamp3
XM_034301717.1 mRNA downstream 135107 12915978 ~ 12926237 (-) False scamp3
XM_026928439.2 mRNA downstream 161384 12860573 ~ 12899960 (-) True ash1l
XM_034301473.1 mRNA upstream 23334 13087487 ~ 13091746 (-) True LOC117596411
XM_026927904.2 mRNA upstream 325763 13389916 ~ 13392833 (-) True dpm3
XM_026927908.2 mRNA upstream 344904 13409057 ~ 13443086 (-) False trim46b
XM_026927906.2 mRNA upstream 344904 13409057 ~ 13443086 (-) True trim46b
XM_034301492.1 mRNA upstream 348815 13412968 ~ 13443086 (-) False trim46b
trnav-cac_26 other downstream 481693 12579580 ~ 12579651 (-) True trnav-cac_26
trnav-aac_26 other downstream 482543 12578729 ~ 12578801 (-) True trnav-aac_26
trnav-cac_25 other downstream 483684 12577588 ~ 12577660 (-) True trnav-cac_25
trnav-aac_25 other downstream 484540 12576732 ~ 12576804 (-) True trnav-aac_25
trnav-aac_24 other downstream 486529 12574740 ~ 12574815 (-) True trnav-aac_24
TU480489 other upstream 76541 13140694 ~ 13141115 (-) True G404999
TU480639 other upstream 325811 13389964 ~ 13392735 (-) False dpm3
TU480779 other upstream 492003 13556156 ~ 13558620 (-) False cks1b
TU480964 other upstream 695608 13759761 ~ 13761516 (-) False s100a11
TU480965 other upstream 695608 13759761 ~ 13761555 (-) True s100a11

Expression Profile