Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU480446 |
| length | 225 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G404956 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047623.1 |
| NCBI id | CM018569.1 |
| chromosome length | 15305753 |
| location | 13106733 ~ 13106957 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU480433 | lncRNA | downstream | 19534 | 13086961 ~ 13087199 (-) | True | G404943 |
| TU480415 | lncRNA | downstream | 42580 | 13061344 ~ 13064153 (-) | True | G404927 |
| TU480385 | lncRNA | downstream | 81276 | 13025247 ~ 13025457 (-) | True | G404897 |
| TU480387 | lncRNA | downstream | 81615 | 13022744 ~ 13025118 (-) | True | G404899 |
| TU480404 | lncRNA | downstream | 85429 | 13018593 ~ 13021304 (-) | True | G404916 |
| TU480449 | lncRNA | upstream | 5476 | 13112433 ~ 13112641 (-) | True | G404959 |
| TU480472 | lncRNA | upstream | 20442 | 13127399 ~ 13127656 (-) | True | G404982 |
| TU480487 | lncRNA | upstream | 33463 | 13140420 ~ 13140655 (-) | True | G404997 |
| TU480522 | lncRNA | upstream | 111322 | 13218279 ~ 13218480 (-) | True | G405032 |
| TU480641 | lncRNA | upstream | 259480 | 13366437 ~ 13366776 (-) | True | G405144 |
| XM_034301473.1 | mRNA | downstream | 14987 | 13087487 ~ 13091746 (-) | True | LOC117596411 |
| XM_034301498.1 | mRNA | downstream | 160356 | 12937224 ~ 12946377 (-) | True | crabp2b |
| XM_034301716.1 | mRNA | downstream | 180469 | 12915978 ~ 12926264 (-) | True | scamp3 |
| XM_034301717.1 | mRNA | downstream | 180496 | 12915978 ~ 12926237 (-) | False | scamp3 |
| XM_026928439.2 | mRNA | downstream | 206773 | 12860573 ~ 12899960 (-) | True | ash1l |
| XM_026927904.2 | mRNA | upstream | 282959 | 13389916 ~ 13392833 (-) | True | dpm3 |
| XM_026927908.2 | mRNA | upstream | 302100 | 13409057 ~ 13443086 (-) | False | trim46b |
| XM_026927906.2 | mRNA | upstream | 302100 | 13409057 ~ 13443086 (-) | True | trim46b |
| XM_034301492.1 | mRNA | upstream | 306011 | 13412968 ~ 13443086 (-) | False | trim46b |
| XM_034301494.1 | mRNA | upstream | 306448 | 13413405 ~ 13443086 (-) | False | trim46b |
| trnav-cac_26 | other | downstream | 527082 | 12579580 ~ 12579651 (-) | True | trnav-cac_26 |
| trnav-aac_26 | other | downstream | 527932 | 12578729 ~ 12578801 (-) | True | trnav-aac_26 |
| trnav-cac_25 | other | downstream | 529073 | 12577588 ~ 12577660 (-) | True | trnav-cac_25 |
| trnav-aac_25 | other | downstream | 529929 | 12576732 ~ 12576804 (-) | True | trnav-aac_25 |
| trnav-aac_24 | other | downstream | 531918 | 12574740 ~ 12574815 (-) | True | trnav-aac_24 |
| TU480489 | other | upstream | 33737 | 13140694 ~ 13141115 (-) | True | G404999 |
| TU480639 | other | upstream | 283007 | 13389964 ~ 13392735 (-) | False | dpm3 |
| TU480779 | other | upstream | 449199 | 13556156 ~ 13558620 (-) | False | cks1b |
| TU480964 | other | upstream | 652804 | 13759761 ~ 13761516 (-) | False | s100a11 |
| TU480965 | other | upstream | 652804 | 13759761 ~ 13761555 (-) | True | s100a11 |
